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  5. Solyc04g080830

Solyc04g080830


Description : Pentatricopeptide repeat (PPR-like) superfamily protein (AHRD V3.3 *** AT1G19720.1)


Gene families : OG_42_0009417 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009417_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc04g080830
Cluster HCCA clusters: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
Brara.F01398.1 No alias RNA editing factor *(DYW7) 0.02 Orthogroups_2024-Update
PSME_00001907-RA No alias (at3g12770 : 579.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 759 874
IPR002885 Pentatricopeptide_repeat 115 139
IPR002885 Pentatricopeptide_repeat 142 171
IPR002885 Pentatricopeptide_repeat 214 239
IPR002885 Pentatricopeptide_repeat 660 682
IPR002885 Pentatricopeptide_repeat 240 283
IPR002885 Pentatricopeptide_repeat 482 529
IPR002885 Pentatricopeptide_repeat 582 626
IPR002885 Pentatricopeptide_repeat 410 449
IPR002885 Pentatricopeptide_repeat 309 357
No external refs found!