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  5. Solyc04g081820

Solyc04g081820


Description : LA motif RNA-binding domain-containing protein


Gene families : OG_42_0002397 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g081820
Cluster HCCA clusters: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AC233901.1_FG004 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
GRMZM2G140339 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
evm.model.tig00000498.93 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006630 La_HTH 394 442
No external refs found!