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  5. Solyc04g081900

Solyc04g081900


Description : Cysteine/Histidine-rich C1 domain family protein (AHRD V3.3 --* AT2G44380.1)


Gene families : OG_42_0000563 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g081900
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
PSME_00005504-RA No alias (at1g60420 : 373.0) Reduce transmission through pollen.;... 0.03 Orthogroups_2024-Update
PSME_00048401-RA No alias (at1g60420 : 94.0) Reduce transmission through pollen.;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
InterPro domains Description Start Stop
IPR012336 Thioredoxin-like_fold 180 277
IPR012336 Thioredoxin-like_fold 11 105
IPR004146 DC1 325 369
No external refs found!