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  5. Solyc04g082110

Solyc04g082110


Description : Rop guanine nucleotide exchange factor, putative (AHRD V3.3 *** B9SR08_RICCO)


Gene families : OG_42_0000202 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g082110
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
At4g13240 No alias Rop guanine nucleotide exchange factor 9... 0.02 Orthogroups_2024-Update
At4g38430 No alias Rop guanine nucleotide exchange factor 1... 0.03 Orthogroups_2024-Update
Brara.K01857.1 No alias RopGEF guanine nucleotide exchange factor *(PRONE) 0.03 Orthogroups_2024-Update
Glyma.03G013500 No alias RHO guanyl-nucleotide exchange factor 3 0.02 Orthogroups_2024-Update
LOC_Os05g38000 No alias ATROPGEF7/ROPGEF7, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00024626-RA No alias (at3g24620 : 469.0) Encodes a member of KPP-like gene... 0.03 Orthogroups_2024-Update
Potri.001G127300 No alias RHO guanyl-nucleotide exchange factor 14 0.05 Orthogroups_2024-Update
Potri.006G092600 No alias RHO guanyl-nucleotide exchange factor 7 0.03 Orthogroups_2024-Update
Seita.2G314800.1 No alias RopGEF guanine nucleotide exchange factor *(PRONE) 0.03 Orthogroups_2024-Update
Sobic.002G284100.1 No alias RopGEF guanine nucleotide exchange factor *(PRONE) 0.03 Orthogroups_2024-Update
Sopen01g038420 No alias PRONE (Plant-specific Rop nucleotide exchanger) 0.03 Orthogroups_2024-Update
Sopen04g035740 No alias PRONE (Plant-specific Rop nucleotide exchanger) 0.03 Orthogroups_2024-Update
Sopen09g006230 No alias PRONE (Plant-specific Rop nucleotide exchanger) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005512 PRONE_dom 110 482
No external refs found!