Solyc05g005090

Description : Knotted-1 homeobox protein (AHRD V3.3 *** R9R650_9FABA)

Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc05g005090
Cluster	HCCA clusters: Cluster_134

Target	Alias	Description	ECC score	Gene Family Method
A4A49_22921	No alias	homeobox protein knotted-1-like let6	0.03	Orthogroups_2024-Update
A4A49_37821	No alias	homeobox protein knotted-1-like let12	0.02	Orthogroups_2024-Update
Brara.B01915.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
Brara.H02211.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I01459.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G017087	No alias	KNOTTED-like from Arabidopsis thaliana	0.02	Orthogroups_2024-Update
Glyma.04G064100	No alias	KNOTTED1-like homeobox gene 3	0.04	Orthogroups_2024-Update
Glyma.10G147000	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
Glyma.18G083100	No alias	KNOTTED1-like homeobox gene 5	0.04	Orthogroups_2024-Update
LOC_Os03g47016	No alias	homeobox protein knotted-1-like 10, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g03884	No alias	homeobox protein knotted-1-like 6, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os08g19650	No alias	homeobox protein knotted-1, putative, expressed	0.02	Orthogroups_2024-Update
MA_10428446g0010	No alias	(at4g08150 : 291.0) A member of class I knotted1-like...	0.04	Orthogroups_2024-Update
MA_41523g0010	No alias	(at4g08150 : 138.0) A member of class I knotted1-like...	0.03	Orthogroups_2024-Update
PSME_00033425-RA	No alias	(o04135\|knap2_maldo : 176.0) Homeobox protein...	0.03	Orthogroups_2024-Update
PSME_00035381-RA	No alias	(p46609\|osh1_orysa : 118.0) Homeobox protein OSH1 -...	0.04	Orthogroups_2024-Update
Potri.004G004700	No alias	KNOX/ELK homeobox transcription factor	0.02	Orthogroups_2024-Update
Potri.005G017200	No alias	KNOTTED1-like homeobox gene 6	0.06	Orthogroups_2024-Update
Sobic.001G106200.1	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G023900.1	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update
Solyc12g010410	No alias	Homeobox protein knotted-1, putative (AHRD V3.3 *** B9RNZ6_RICCO)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003954	NADH dehydrogenase activity	IEP	Predicted GO
MF	GO:0004427	inorganic diphosphatase activity	IEP	Predicted GO
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Predicted GO
CC	GO:0009522	photosystem I	IEP	Predicted GO
CC	GO:0009579	thylakoid	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
CC	GO:0016021	integral component of membrane	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predicted GO
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
CC	GO:0031224	intrinsic component of membrane	IEP	Predicted GO
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	215	236
IPR005540	KNOX1	90	131
IPR005541	KNOX2	141	188
IPR008422	Homeobox_KN_domain	255	294

External Links

No external refs found!

Solyc05g005090

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation