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  5. Solyc05g005540

Solyc05g005540


Description : Polygalacturonase non-catalytic subunit AroGP3 (AHRD V3.3 *** GP3_SOLLC)


Gene families : OG_42_0001780 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g005540
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
A4A49_29052 No alias polygalacturonase 1 beta-like protein 3 0.03 Orthogroups_2024-Update
MA_10430057g0010 No alias (at1g70370 : 422.0) polygalacturonase 2 (PG2); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00011367-RA No alias (at1g60390 : 377.0) polygalacturonase 1 (PG1); FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00022036-RA No alias (at1g60390 : 471.0) polygalacturonase 1 (PG1); FUNCTIONS... 0.03 Orthogroups_2024-Update
Sobic.007G116800.1 No alias regulatory protein of polygalacturonase activity 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005811 lipid droplet IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0052736 beta-glucanase activity IEP Predicted GO
MF GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group IEP Predicted GO
InterPro domains Description Start Stop
IPR004873 BURP_dom 396 608
No external refs found!