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  5. evm.model.tig00000551.22

evm.model.tig00000551.22


Description : (p17093|rs11_soybn : 211.0) 40S ribosomal protein S11 - Glycine max (Soybean) & (at3g48930 : 209.0) embryo defective 1080 (EMB1080); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1); Has 1290 Blast hits to 1288 proteins in 469 species: Archae - 240; Bacteria - 242; Metazoa - 305; Fungi - 148; Plants - 140; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description)


Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000551.22
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
268639 No alias Nucleic acid-binding, OB-fold-like protein 0.07 Orthogroups_2024-Update
A4A49_60485 No alias 40s ribosomal protein s11 0.16 Orthogroups_2024-Update
At3g48930 No alias 40S ribosomal protein S11-1... 0.05 Orthogroups_2024-Update
At4g30800 No alias 40S ribosomal protein S11-2... 0.04 Orthogroups_2024-Update
At5g23740 No alias RPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3] 0.01 Orthogroups_2024-Update
Bradi3g48600 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
Bradi5g21630 No alias Nucleic acid-binding, OB-fold-like protein 0.22 Orthogroups_2024-Update
Brara.A02200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Brara.B03705.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.F01642.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Brara.F02607.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.I00599.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Cre12.g514500 No alias Nucleic acid-binding, OB-fold-like protein 0.27 Orthogroups_2024-Update
GRMZM2G019325 No alias ribosomal protein S11-beta 0.21 Orthogroups_2024-Update
GRMZM2G044800 No alias ribosomal protein S11-beta 0.11 Orthogroups_2024-Update
Glyma.09G094200 No alias ribosomal protein S11-beta 0.08 Orthogroups_2024-Update
Glyma.13G165200 No alias ribosomal protein S11-beta 0.15 Orthogroups_2024-Update
Glyma.17G105900 No alias ribosomal protein S11-beta 0.02 Orthogroups_2024-Update
HORVU2Hr1G099230.8 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
HORVU6Hr1G056610.7 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Kfl00435_0080 kfl00435_0080_v1.1 (p17093|rs11_soybn : 243.0) 40S ribosomal protein S11 -... 0.08 Orthogroups_2024-Update
LOC_Os04g52361 No alias ribosomal protein S17, putative, expressed 0.06 Orthogroups_2024-Update
MA_19350g0010 No alias (at3g48930 : 247.0) embryo defective 1080 (EMB1080);... 0.14 Orthogroups_2024-Update
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.01 Orthogroups_2024-Update
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.09 Orthogroups_2024-Update
PSME_00044770-RA No alias (at3g48930 : 222.0) embryo defective 1080 (EMB1080);... 0.03 Orthogroups_2024-Update
Potri.002G140400 No alias ribosomal protein S11-beta 0.18 Orthogroups_2024-Update
Potri.014G053300 No alias ribosomal protein S11-beta 0.14 Orthogroups_2024-Update
Potri.018G115400 No alias ribosomal protein S11-beta 0.11 Orthogroups_2024-Update
Pp1s21_269V6 No alias 40s ribosomal protein s11 0.42 Orthogroups_2024-Update
Pp1s30_89V6 No alias 40s ribosomal protein s11 0.11 Orthogroups_2024-Update
Pp1s51_307V6 No alias 40s ribosomal protein s11 0.15 Orthogroups_2024-Update
Pp1s79_58V6 No alias 40s ribosomal protein s11 0.26 Orthogroups_2024-Update
Seita.1G231100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.32 Orthogroups_2024-Update
Seita.7G157100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Seita.7G234800.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.22 Orthogroups_2024-Update
Sobic.004G213200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Sobic.006G138100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.006G213000.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.32 Orthogroups_2024-Update
Solyc06g073790 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.23 Orthogroups_2024-Update
Solyc06g073800 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.26 Orthogroups_2024-Update
Solyc12g042080 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.21 Orthogroups_2024-Update
Sopen06g030190 No alias Ribosomal protein S17 0.28 Orthogroups_2024-Update
Sopen12g021180 No alias Ribosomal protein S17 0.25 Orthogroups_2024-Update
evm.model.contig_3727.5 No alias (at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like... 0.33 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032440 Ribosomal_S11_N 15 84
IPR000266 Ribosomal_S17/S11 86 154
No external refs found!