Description : Ribosomal protein S9, putative (AHRD V3.3 *** B9RYF4_RICCO)
Gene families : OG_42_0002098 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002098_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc05g005690 | |
Cluster | HCCA clusters: Cluster_34 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
138369 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.11 | Orthogroups_2024-Update | |
A4A49_19998 | No alias | 40s ribosomal protein s16 | 0.03 | Orthogroups_2024-Update | |
A4A49_46097 | No alias | 40s ribosomal protein s16 | 0.04 | Orthogroups_2024-Update | |
Brara.A03778.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Brara.C00820.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
Brara.C03046.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
Brara.E03459.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
Brara.J01727.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
Cre13.g573351 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
GRMZM2G353103 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G377797 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G103600 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.05G241200 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Glyma.08G048200 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.06 | Orthogroups_2024-Update | |
HORVU4Hr1G023530.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
HORVU4Hr1G023570.2 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
HORVU5Hr1G045620.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Kfl00461_0050 | kfl00461_0050_v1.1 | (p46293|rs16_goshi : 254.0) 40S ribosomal protein S16 -... | 0.03 | Orthogroups_2024-Update | |
Mp1g07720.1 | No alias | component RPS16 of SSU proteome | 0.03 | Orthogroups_2024-Update | |
Potri.001G304700 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.06 | Orthogroups_2024-Update | |
Pp1s17_377V6 | No alias | 40s ribosomal protein s16 | 0.04 | Orthogroups_2024-Update | |
Pp1s199_17V6 | No alias | 40s ribosomal protein s16 | 0.03 | Orthogroups_2024-Update | |
Pp1s228_28V6 | No alias | 40s ribosomal protein s16 | 0.02 | Orthogroups_2024-Update | |
Seita.7G306900.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
Seita.8G007700.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
Sobic.005G019700.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.11 | Orthogroups_2024-Update | |
Sobic.008G021100.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Sopen01g030490 | No alias | Ribosomal protein S9/S16 | 0.04 | Orthogroups_2024-Update | |
Sopen04g014030 | No alias | Ribosomal protein S9/S16 | 0.11 | Orthogroups_2024-Update | |
evm.model.contig_435.17 | No alias | (at2g09990 : 160.0) Ribosomal protein S5 domain 2-like... | 0.11 | Orthogroups_2024-Update | |
evm.model.tig00000123.14 | No alias | (at2g09990 : 175.0) Ribosomal protein S5 domain 2-like... | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
MF | GO:0051082 | unfolded protein binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000754 | Ribosomal_S9 | 15 | 147 |
No external refs found! |