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  5. Solyc05g005940

Solyc05g005940


Description : Major facilitator superfamily protein (AHRD V3.3 *** AT1G52190.1)


Gene families : OG_42_0000961 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g005940
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G037200 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G016900 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Solyc05g005960 No alias Major facilitator superfamily protein (AHRD V3.3 *** AT1G52190.1) 0.03 Orthogroups_2024-Update
Sopen04g001090 No alias POT family 0.03 Orthogroups_2024-Update
Sopen05g001970 No alias POT family 0.03 Orthogroups_2024-Update
Sopen05g002010 No alias POT family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEA InterProScan predictions
BP GO:0006810 transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000109 POT_fam 84 518
No external refs found!