evm.model.tig00000615.59


Description : (at1g29970 : 221.0) 60S ribosomal protein L18A-1; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G17080.1); Has 80 Blast hits to 80 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q943f3|rl18a_orysa : 216.0) 60S ribosomal protein L18a - Oryza sativa (Rice) & (reliability: 442.0) & (original description: no original description)


Gene families : OG_42_0001510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001510_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000615.59
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
227198 No alias Ribosomal protein L18ae/LX family protein 0.15 Orthogroups_2024-Update
A4A49_41727 No alias 60s ribosomal protein l18a 0.13 Orthogroups_2024-Update
A4A49_56604 No alias 60s ribosomal protein l18a 0.1 Orthogroups_2024-Update
At3g14600 No alias 60S ribosomal protein L18a-3... 0.03 Orthogroups_2024-Update
Bradi2g16430 No alias Ribosomal protein L18ae/LX family protein 0.17 Orthogroups_2024-Update
Bradi2g46010 No alias Ribosomal protein L18ae/LX family protein 0.15 Orthogroups_2024-Update
Bradi2g50020 No alias Ribosomal protein L18ae/LX family protein 0.05 Orthogroups_2024-Update
Brara.C01744.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Brara.C03533.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.D02096.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Brara.E00977.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Brara.E02666.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Cre01.g047750 No alias Ribosomal protein L18ae/LX family protein 0.19 Orthogroups_2024-Update
GRMZM2G022619 No alias Ribosomal protein L18ae/LX family protein 0.1 Orthogroups_2024-Update
GRMZM2G126928 No alias Ribosomal protein L18ae/LX family protein 0.02 Orthogroups_2024-Update
Glyma.02G284900 No alias Ribosomal protein L18ae/LX family protein 0.05 Orthogroups_2024-Update
Glyma.13G217100 No alias Ribosomal protein L18ae/LX family protein 0.03 Orthogroups_2024-Update
Glyma.14G029901 No alias Ribosomal protein L18ae/LX family protein 0.11 Orthogroups_2024-Update
Glyma.15G095400 No alias Ribosomal protein L18ae/LX family protein 0.08 Orthogroups_2024-Update
Glyma.18G110000 No alias Ribosomal protein L18ae/LX family protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G088040.2 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Kfl00905_0040 kfl00905_0040_v1.1 (at2g34480 : 295.0) Ribosomal protein L18ae/LX family... 0.06 Orthogroups_2024-Update
LOC_Os01g47660 No alias 60S ribosomal protein L18a, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os01g54870 No alias 60S ribosomal protein L18a, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os05g49030 No alias 60S ribosomal protein L18a, putative, expressed 0.03 Orthogroups_2024-Update
MA_12029g0010 No alias (q943f3|rl18a_orysa : 339.0) 60S ribosomal protein L18a... 0.07 Orthogroups_2024-Update
Mp1g17730.1 No alias component RPL18a of LSU proteome component 0.12 Orthogroups_2024-Update
PSME_00023758-RA No alias (q943f3|rl18a_orysa : 335.0) 60S ribosomal protein L18a... 0.07 Orthogroups_2024-Update
Potri.002G057600 No alias Ribosomal protein L18ae/LX family protein 0.1 Orthogroups_2024-Update
Potri.004G063400 No alias Ribosomal protein L18ae/LX family protein 0.05 Orthogroups_2024-Update
Pp1s184_111V6 No alias 60s ribosomal protein l18a 0.25 Orthogroups_2024-Update
Pp1s44_13V6 No alias 60s ribosomal protein l18a 0.15 Orthogroups_2024-Update
Pp1s56_243V6 No alias 60s ribosomal protein l18a 0.12 Orthogroups_2024-Update
Pp1s5_178V6 No alias 60s ribosomal protein l18a 0.02 Orthogroups_2024-Update
Pp1s74_193V6 No alias 60s ribosomal protein l18a 0.31 Orthogroups_2024-Update
Seita.3G145500.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Seita.5G262600.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.8G085600.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.003G249700.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Sobic.005G091700.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Sobic.009G233400.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Solyc02g070640 No alias 60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU) 0.26 Orthogroups_2024-Update
Solyc02g070650 No alias 60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU) 0.21 Orthogroups_2024-Update
Solyc06g065590 No alias 60S ribosomal protein L18a (AHRD V3.3 *** K4C7I8_SOLLC) 0.06 Orthogroups_2024-Update
Solyc08g016180 No alias 60S ribosomal protein L18a (AHRD V3.3 *** K4CJE2_SOLLC) 0.29 Orthogroups_2024-Update
Sopen02g019720 No alias Ribosomal L18ae/LX protein domain 0.02 Orthogroups_2024-Update
Sopen02g019730 No alias Ribosomal L18ae/LX protein domain 0.1 Orthogroups_2024-Update
Sopen06g024090 No alias Ribosomal L18ae/LX protein domain 0.11 Orthogroups_2024-Update
Sopen08g006530 No alias Ribosomal L18ae/LX protein domain 0.27 Orthogroups_2024-Update
evm.model.contig_448.2 No alias (q943f3|rl18a_orysa : 186.0) 60S ribosomal protein L18a... 0.26 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 4 124
No external refs found!