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  5. evm.model.tig00000655.28

evm.model.tig00000655.28


Description : (at5g50920 : 1134.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 1121.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 2268.0) & (original description: no original description)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000655.28
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
147913 No alias Clp ATPase 0.02 Orthogroups_2024-Update
170696 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
174539 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
411118 No alias casein lytic proteinase B3 0.01 Orthogroups_2024-Update
Bradi1g10689 No alias heat shock protein 101 0.01 Orthogroups_2024-Update
Bradi1g50660 No alias heat shock protein 101 0.01 Orthogroups_2024-Update
Bradi2g49660 No alias heat shock protein 101 0.03 Orthogroups_2024-Update
Bradi3g44335 No alias CLPC homologue 1 0.04 Orthogroups_2024-Update
Bradi3g44341 No alias CLPC homologue 1 0.01 Orthogroups_2024-Update
Bradi5g08920 No alias Clp ATPase 0.03 Orthogroups_2024-Update
Cre02.g090850 No alias casein lytic proteinase B3 0.01 Orthogroups_2024-Update
Cre10.g465550 No alias Clp ATPase 0.01 Orthogroups_2024-Update
Cre11.g467575 No alias casein lytic proteinase B3 0.03 Orthogroups_2024-Update
Cre12.g533351 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Cre43.g760497 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
GRMZM2G360681 No alias heat shock protein 101 0.01 Orthogroups_2024-Update
Glyma.04G062200 No alias casein lytic proteinase B4 0.02 Orthogroups_2024-Update
Glyma.04G200400 No alias CLPC homologue 1 0.03 Orthogroups_2024-Update
Glyma.04G203300 No alias Clp ATPase 0.02 Orthogroups_2024-Update
Glyma.05G022200 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Glyma.06G165200 No alias CLPC homologue 1 0.01 Orthogroups_2024-Update
Glyma.06G202200 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Glyma.13G058600 No alias casein lytic proteinase B3 0.03 Orthogroups_2024-Update
HORVU4Hr1G090440.2 No alias organellar chaperone *(Clp-p/Clp-m) 0.02 Orthogroups_2024-Update
HORVU5Hr1G031470.8 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G028690.3 No alias organellar chaperone *(Clp-p/Clp-m) 0.02 Orthogroups_2024-Update
LOC_Os02g08490 No alias chaperone protein clpB 1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g31300 No alias chaperone protein clpB 1, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g44340 No alias heat shock protein 101, putative, expressed 0.02 Orthogroups_2024-Update
MA_8117g0010 No alias (at5g50920 : 620.0) Encodes a protein that is similar to... 0.02 Orthogroups_2024-Update
Mp1g02560.1 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.02 Orthogroups_2024-Update
Mp1g16450.1 No alias cytosolic chaperone (Hsp101) 0.01 Orthogroups_2024-Update
Mp3g09010.1 No alias organellar chaperone (Clp-p|Clp-m) 0.03 Orthogroups_2024-Update
PSME_00000476-RA No alias (q6f2y7|hs101_orysa : 1375.0) Heat shock protein 101 -... 0.02 Orthogroups_2024-Update
PSME_00000477-RA No alias (q6f2y7|hs101_orysa : 1387.0) Heat shock protein 101 -... 0.02 Orthogroups_2024-Update
PSME_00004919-RA No alias (at2g25140 : 1357.0) Encodes ClpB4, which belongs to the... 0.02 Orthogroups_2024-Update
PSME_00005341-RA No alias (q6f2y7|hs101_orysa : 1383.0) Heat shock protein 101 -... 0.02 Orthogroups_2024-Update
PSME_00014106-RA No alias (at5g15450 : 850.0) Encodes a chloroplast-targeted... 0.03 Orthogroups_2024-Update
PSME_00031080-RA No alias (at5g51070 : 879.0) ATP-dependent Clp protease... 0.02 Orthogroups_2024-Update
PSME_00036597-RA No alias (at5g50920 : 1365.0) Encodes a protein that is similar... 0.02 Orthogroups_2024-Update
Potri.004G124800 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
Potri.012G105900 No alias CLPC homologue 1 0.01 Orthogroups_2024-Update
Potri.015G056900 No alias heat shock protein 101 0.01 Orthogroups_2024-Update
Potri.015G110000 No alias Clp ATPase 0.01 Orthogroups_2024-Update
Potri.017G090600 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
Pp1s196_10V6 No alias chaperone clpb expressed 0.02 Orthogroups_2024-Update
Pp1s252_87V6 No alias atpase aaa-2 domain protein 0.02 Orthogroups_2024-Update
Pp1s27_248V6 No alias atp-dependent clp protease 0.02 Orthogroups_2024-Update
Pp1s300_55V6 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Pp1s81_51V6 No alias atpase aaa-2 domain protein 0.03 Orthogroups_2024-Update
Seita.7G079400.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.02 Orthogroups_2024-Update
Seita.7G086400.1 No alias chaperone component *(ClpD) of chloroplast Clp-type... 0.01 Orthogroups_2024-Update
Seita.9G360800.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.01 Orthogroups_2024-Update
Sobic.004G066500.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.02 Orthogroups_2024-Update
Sobic.006G065100.1 No alias chaperone component *(ClpD) of chloroplast Clp-type... 0.02 Orthogroups_2024-Update
Solyc03g115230 No alias Solanum lycopersicum heat shock protein 0.02 Orthogroups_2024-Update
Solyc12g042060 No alias ATP-dependent Clp protease ATP-binding subunit ClpA... 0.02 Orthogroups_2024-Update
Sopen03g034270 No alias AAA domain (Cdc48 subfamily) 0.02 Orthogroups_2024-Update
Sopen12g021150 No alias AAA domain (Cdc48 subfamily) 0.02 Orthogroups_2024-Update
evm.model.contig_3516.2 No alias (at1g74310 : 794.0) Encodes ClpB1, which belongs to the... 0.03 Orthogroups_2024-Update
evm.model.contig_487.1 No alias (p35100|clpc_pea : 624.0) ATP-dependent Clp protease... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
BP GO:0006570 tyrosine metabolic process IEP Predicted GO
BP GO:0006571 tyrosine biosynthetic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0017062 respiratory chain complex III assembly IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predicted GO
BP GO:0034551 mitochondrial respiratory chain complex III assembly IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 647 824
IPR004176 Clp_N 201 249
IPR004176 Clp_N 125 177
IPR019489 Clp_ATPase_C 830 909
IPR003959 ATPase_AAA_core 312 431
No external refs found!