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  5. evm.model.tig00000691.35

evm.model.tig00000691.35


Description : (at3g06010 : 234.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 220.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 468.0) & (original description: no original description)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000691.35
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Bradi1g26940 No alias chromatin remodeling 4 0.01 Orthogroups_2024-Update
Brara.I00886.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre03.g158550 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Cre09.g390000 No alias chromatin remodeling factor17 0.02 Orthogroups_2024-Update
Kfl00030_0270 kfl00030_0270_v1.1 (at5g66750 : 640.0) Protein is similar to SWI2/SNF2... 0.03 Orthogroups_2024-Update
Kfl00055_0090 kfl00055_0090_v1.... (q7g8y3|isw2_orysa : 1337.0) Probable chromatin... 0.02 Orthogroups_2024-Update
Kfl00125_0020 kfl00125_0020_v1.... (at2g13370 : 403.0) chromatin remodeling 5 (CHR5);... 0.04 Orthogroups_2024-Update
Kfl00142_0080 kfl00142_0080_v1.... (q7g8y3|isw2_orysa : 220.0) Probable chromatin... 0.01 Orthogroups_2024-Update
MA_104034g0010 No alias (at5g66750 : 811.0) Protein is similar to SWI2/SNF2... 0.02 Orthogroups_2024-Update
MA_8990972g0010 No alias (at2g25170 : 180.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
Potri.019G129900 No alias chromatin remodeling 1 0.02 Orthogroups_2024-Update
Pp1s33_329V6 No alias chromatin remodeling complex subunit 0.01 Orthogroups_2024-Update
Solyc02g085390 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.02 Orthogroups_2024-Update
Solyc06g054560 No alias RNA helicase DEAH-box19 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0010639 negative regulation of organelle organization IEP Predicted GO
BP GO:0010824 regulation of centrosome duplication IEP Predicted GO
BP GO:0010826 negative regulation of centrosome duplication IEP Predicted GO
BP GO:0010948 negative regulation of cell cycle process IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0030030 cell projection organization IEP Predicted GO
BP GO:0030031 cell projection assembly IEP Predicted GO
BP GO:0032886 regulation of microtubule-based process IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0033044 regulation of chromosome organization IEP Predicted GO
CC GO:0036038 MKS complex IEP Predicted GO
CC GO:0042555 MCM complex IEP Predicted GO
BP GO:0043086 negative regulation of catalytic activity IEP Predicted GO
BP GO:0044092 negative regulation of molecular function IEP Predicted GO
CC GO:0044441 ciliary part IEP Predicted GO
CC GO:0044463 cell projection part IEP Predicted GO
BP GO:0044782 cilium organization IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046605 regulation of centrosome cycle IEP Predicted GO
BP GO:0046606 negative regulation of centrosome cycle IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051095 regulation of helicase activity IEP Predicted GO
BP GO:0051097 negative regulation of helicase activity IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051129 negative regulation of cellular component organization IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051346 negative regulation of hydrolase activity IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051494 negative regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0060271 cilium assembly IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0070507 regulation of microtubule cytoskeleton organization IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Predicted GO
BP GO:0120036 plasma membrane bounded cell projection organization IEP Predicted GO
CC GO:0120038 plasma membrane bounded cell projection part IEP Predicted GO
BP GO:1905462 regulation of DNA duplex unwinding IEP Predicted GO
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Predicted GO
BP GO:1905774 regulation of DNA helicase activity IEP Predicted GO
BP GO:1905775 negative regulation of DNA helicase activity IEP Predicted GO
BP GO:2001251 negative regulation of chromosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 262 292
IPR001650 Helicase_C 534 658
IPR000330 SNF2_N 325 484
No external refs found!