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  5. evm.model.tig00000692.51

evm.model.tig00000692.51


Description : (at1g51460 : 166.0) ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 379847 Blast hits to 348933 proteins in 4101 species: Archae - 6887; Bacteria - 304547; Metazoa - 7636; Fungi - 6582; Plants - 5428; Viruses - 18; Other Eukaryotes - 48749 (source: NCBI BLink). & (q7fmw4|pdr15_orysa : 142.0) Pleiotropic drug resistance protein 15 - Oryza sativa (Rice) & (reliability: 332.0) & (original description: no original description)


Gene families : OG_42_0000429 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000429_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000692.51
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Glyma.10G205600 No alias ABC-2 type transporter family protein 0.01 Orthogroups_2024-Update
LOC_Os08g07010 No alias ABC-2 type transporter domain containing protein, expressed 0.01 Orthogroups_2024-Update
Potri.001G404000 No alias ABC-2 type transporter family protein 0.01 Orthogroups_2024-Update
Potri.013G111900 No alias ATP-binding casette family G25 0.02 Orthogroups_2024-Update
Sopen08g024060 No alias ABC-2 type transporter 0.01 Orthogroups_2024-Update
evm.model.contig_621.1 No alias (at4g27420 : 138.0) ABC-2 type transporter family... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 188 346
No external refs found!