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  5. evm.model.tig00000792.24

evm.model.tig00000792.24


Description : (at1g73060 : 155.0) Low PSII Accumulation 3 (LPA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1995) (TAIR:AT5G48790.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)


Gene families : OG_42_0005888 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000792.24
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
166238 No alias Low PSII Accumulation 3 0.02 Orthogroups_2024-Update
A4A49_23480 No alias protein low psii accumulation 3, chloroplastic 0.01 Orthogroups_2024-Update
Bradi3g01550 No alias Low PSII Accumulation 3 0.03 Orthogroups_2024-Update
Cre03.g184550 No alias Low PSII Accumulation 3 0.04 Orthogroups_2024-Update
GRMZM2G169699 No alias Low PSII Accumulation 3 0.02 Orthogroups_2024-Update
Glyma.08G219200 No alias Low PSII Accumulation 3 0.03 Orthogroups_2024-Update
Kfl00693_0040 kfl00693_0040_v1.1 (at1g73060 : 357.0) Low PSII Accumulation 3 (LPA3);... 0.01 Orthogroups_2024-Update
LOC_Os02g02520 No alias expressed protein 0.01 Orthogroups_2024-Update
Potri.001G044000 No alias Low PSII Accumulation 3 0.02 Orthogroups_2024-Update
Pp1s190_86V6 No alias F3N23.27; leucine-rich repeat family protein... 0.01 Orthogroups_2024-Update
evm.model.contig_3407.3 No alias (at1g73060 : 177.0) Low PSII Accumulation 3 (LPA3);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0061617 MICOS complex IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR018962 DUF1995 96 343
No external refs found!