evm.model.tig00000826.12

Description : (at3g23830 : 98.2) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.; glycine-rich RNA-binding protein 4 (GRP4); CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 2 (TAIR:AT4G13850.3); Has 79 Blast hits to 79 proteins in 22 species: Archae - 3; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 72; Viruses - 1; Other Eukaryotes - 2 (source: NCBI BLink). & (p10979|grpa_maize : 97.4) Glycine-rich RNA-binding, abscisic acid-inducible protein - Zea mays (Maize) & (reliability: 196.4) & (original description: no original description)

Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00000826.12
Cluster	HCCA clusters: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
140819	No alias	glycine-rich RNA-binding protein 4	0.01	Orthogroups_2024-Update
A4A49_03158	No alias	glycine-rich rna-binding protein 4, mitochondrial	0.01	Orthogroups_2024-Update
A4A49_23916	No alias	glycine-rich rna-binding protein rz1c	0.01	Orthogroups_2024-Update
At2g21660	No alias	Glycine-rich RNA-binding protein 7...	0.01	Orthogroups_2024-Update
Brara.B02117.1	No alias	RNA editing factor *(ORRM3)	0.01	Orthogroups_2024-Update
Brara.C01346.1	No alias	RNA editing factor *(ORRM2)	0.02	Orthogroups_2024-Update
Brara.C04224.1	No alias	RNA editing factor *(ORRM3)	0.01	Orthogroups_2024-Update
Brara.E01401.1	No alias	RNA editing factor *(ORRM3)	0.01	Orthogroups_2024-Update
Brara.H00482.1	No alias	RNA editing factor *(ORRM3)	0.01	Orthogroups_2024-Update
Brara.I00645.1	No alias	RNA editing factor *(ORRM3)	0.01	Orthogroups_2024-Update
Glyma.05G121100	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein with...	0.02	Orthogroups_2024-Update
HORVU5Hr1G110370.1	No alias	RNA editing factor *(ORRM3)	0.01	Orthogroups_2024-Update
LOC_Os05g13620	No alias	RNA recognition motif containing protein, putative, expressed	0.01	Orthogroups_2024-Update
LOC_Os10g17454	No alias	RNA recognition motif containing protein, expressed	0.02	Orthogroups_2024-Update
MA_10428777g0010	No alias	(p49310\|grp1_sinal : 115.0) Glycine-rich RNA-binding...	0.01	Orthogroups_2024-Update
MA_10436734g0010	No alias	(at5g61030 : 122.0) encodes a glycine-rich RNA binding...	0.01	Orthogroups_2024-Update
MA_168323g0010	No alias	(at1g60650 : 142.0) RNA-binding (RRM/RBD/RNP motifs)...	0.01	Orthogroups_2024-Update
MA_28218g0010	No alias	(at5g61030 : 138.0) encodes a glycine-rich RNA binding...	0.01	Orthogroups_2024-Update
MA_8928477g0010	No alias	(at5g61030 : 124.0) encodes a glycine-rich RNA binding...	0.01	Orthogroups_2024-Update
Potri.009G116400	No alias	cold, circadian rhythm, and RNA binding 1	0.01	Orthogroups_2024-Update
Pp1s118_100V6	No alias	glycine-rich rna-binding	0.01	Orthogroups_2024-Update
Pp1s45_280V6	No alias	glycine-rich rna-binding	0.02	Orthogroups_2024-Update
Seita.2G062600.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.9G021300.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.002G366800.1	No alias	RNA editing factor *(ORRM3)	0.02	Orthogroups_2024-Update
Sobic.003G401400.1	No alias	RNA editing factor *(ORRM3)	0.02	Orthogroups_2024-Update
Sobic.007G034400.1	No alias	RNA editing factor *(ORRM2)	0.02	Orthogroups_2024-Update
Sopen01g047360	No alias	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.02	Orthogroups_2024-Update
Sopen07g032030	No alias	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005856	cytoskeleton	IEP	Predicted GO
CC	GO:0005885	Arp2/3 protein complex	IEP	Predicted GO
BP	GO:0005996	monosaccharide metabolic process	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0006094	gluconeogenesis	IEP	Predicted GO
BP	GO:0007015	actin filament organization	IEP	Predicted GO
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
BP	GO:0010638	positive regulation of organelle organization	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
BP	GO:0016311	dephosphorylation	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
MF	GO:0016791	phosphatase activity	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
BP	GO:0019318	hexose metabolic process	IEP	Predicted GO
BP	GO:0019319	hexose biosynthetic process	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030832	regulation of actin filament length	IEP	Predicted GO
BP	GO:0030833	regulation of actin filament polymerization	IEP	Predicted GO
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Predicted GO
BP	GO:0031334	positive regulation of protein complex assembly	IEP	Predicted GO
BP	GO:0032271	regulation of protein polymerization	IEP	Predicted GO
BP	GO:0032273	positive regulation of protein polymerization	IEP	Predicted GO
BP	GO:0032535	regulation of cellular component size	IEP	Predicted GO
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Predicted GO
BP	GO:0032970	regulation of actin filament-based process	IEP	Predicted GO
BP	GO:0033043	regulation of organelle organization	IEP	Predicted GO
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predicted GO
BP	GO:0043254	regulation of protein complex assembly	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Predicted GO
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Predicted GO
BP	GO:0044283	small molecule biosynthetic process	IEP	Predicted GO
CC	GO:0044430	cytoskeletal part	IEP	Predicted GO
BP	GO:0045010	actin nucleation	IEP	Predicted GO
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Predicted GO
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Predicted GO
BP	GO:0090066	regulation of anatomical structure size	IEP	Predicted GO
BP	GO:0097435	supramolecular fiber organization	IEP	Predicted GO
BP	GO:0110053	regulation of actin filament organization	IEP	Predicted GO
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Predicted GO
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	11	81

External Links

No external refs found!

evm.model.tig00000826.12

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation