Solyc05g007880

Description : Dof zinc finger protein (AHRD V3.3 *** W9S8B0_9ROSA)

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc05g007880
Cluster	HCCA clusters: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
29563	No alias	OBF binding protein 4	0.03	Orthogroups_2024-Update
29617	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
89924	No alias	cycling DOF factor 1	0.03	Orthogroups_2024-Update
A4A49_12086	No alias	cyclic dof factor 2	0.08	Orthogroups_2024-Update
A4A49_13356	No alias	cyclic dof factor 3	0.07	Orthogroups_2024-Update
A4A49_32286	No alias	cyclic dof factor 2	0.03	Orthogroups_2024-Update
A4A49_33562	No alias	dof zinc finger protein dof4.6	0.04	Orthogroups_2024-Update
A4A49_35213	No alias	dof zinc finger protein dof1.7	0.02	Orthogroups_2024-Update
AC155434.2_FG006	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
At1g26790	No alias	Dof-type zinc finger DNA-binding family protein...	0.04	Orthogroups_2024-Update
At1g64620	No alias	Dof zinc finger protein DOF1.8...	0.03	Orthogroups_2024-Update
At1g69570	No alias	Cyclic dof factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ3]	0.05	Orthogroups_2024-Update
At2g37590	No alias	Dof zinc finger protein DOF2.4...	0.03	Orthogroups_2024-Update
At3g47500	No alias	Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]	0.04	Orthogroups_2024-Update
At3g50410	No alias	OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]	0.03	Orthogroups_2024-Update
At5g39660	No alias	Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]	0.06	Orthogroups_2024-Update
At5g60850	No alias	OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]	0.03	Orthogroups_2024-Update
At5g62430	No alias	Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]	0.05	Orthogroups_2024-Update
Bradi1g17410	No alias	cycling DOF factor 3	0.04	Orthogroups_2024-Update
Bradi2g09720	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
Bradi3g25670	No alias	cycling DOF factor 1	0.03	Orthogroups_2024-Update
Brara.A01411.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Brara.C04204.1	No alias	transcription factor *(DOF)	0.05	Orthogroups_2024-Update
Brara.D00980.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Brara.E01618.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.F02115.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Brara.G01458.1	No alias	transcription factor *(DOF)	0.05	Orthogroups_2024-Update
Brara.G02475.1	No alias	transcription factor *(DOF)	0.05	Orthogroups_2024-Update
Brara.H02152.1	No alias	transcription factor *(DOF)	0.07	Orthogroups_2024-Update
Brara.I03146.1	No alias	transcription factor *(DOF)	0.05	Orthogroups_2024-Update
Brara.I04266.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Cre12.g521150	No alias	cycling DOF factor 2	0.01	Orthogroups_2024-Update
GRMZM2G089949	No alias	cycling DOF factor 2	0.02	Orthogroups_2024-Update
GRMZM2G134545	No alias	TARGET OF MONOPTEROS 6	0.03	Orthogroups_2024-Update
Glyma.04G168300	No alias	cycling DOF factor 3	0.04	Orthogroups_2024-Update
Glyma.05G025900	No alias	cycling DOF factor 3	0.04	Orthogroups_2024-Update
Glyma.06G194800	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Glyma.07G193900	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.13G062500	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
Glyma.15G044800	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.17G101000	No alias	cycling DOF factor 3	0.04	Orthogroups_2024-Update
Glyma.19G023200	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
Glyma.19G118000	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Glyma.20G035200	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
HORVU1Hr1G074140.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
HORVU2Hr1G017290.1	No alias	transcription factor *(DOF)	0.06	Orthogroups_2024-Update
HORVU3Hr1G116260.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
HORVU4Hr1G013890.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Kfl00762_0030	kfl00762_0030_v1.1	(at5g39660 : 127.0) Dof-type zinc finger...	0.02	Orthogroups_2024-Update
LOC_Os01g15900	No alias	expressed protein	0.04	Orthogroups_2024-Update
LOC_Os01g55340	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g47810	No alias	dof zinc finger domain containing protein, putative, expressed	0.03	Orthogroups_2024-Update
Mp2g20790.1	No alias	transcription factor (DOF)	0.03	Orthogroups_2024-Update
PSME_00004776-RA	No alias	(at5g60850 : 127.0) Encodes a zinc finger protein.; OBF...	0.04	Orthogroups_2024-Update
PSME_00028077-RA	No alias	(at5g39660 : 211.0) Dof-type zinc finger...	0.04	Orthogroups_2024-Update
PSME_00041316-RA	No alias	(at5g39660 : 139.0) Dof-type zinc finger...	0.03	Orthogroups_2024-Update
Potri.004G121800	No alias	cycling DOF factor 2	0.05	Orthogroups_2024-Update
Potri.008G087800	No alias	cycling DOF factor 2	0.06	Orthogroups_2024-Update
Potri.017G084600	No alias	cycling DOF factor 2	0.05	Orthogroups_2024-Update
Pp1s118_226V6	No alias	f-box family protein	0.02	Orthogroups_2024-Update
Pp1s124_139V6	No alias	zinc finger	0.02	Orthogroups_2024-Update
Pp1s169_171V6	No alias	cycling dof factor 2	0.02	Orthogroups_2024-Update
Pp1s351_46V6	No alias	zinc finger	0.02	Orthogroups_2024-Update
Pp1s37_7V6	No alias	zinc finger	0.05	Orthogroups_2024-Update
Pp1s392_2V6	No alias	zinc finger	0.02	Orthogroups_2024-Update
Seita.3G327800.1	No alias	transcription factor *(DOF)	0.01	Orthogroups_2024-Update
Seita.5G052700.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Seita.6G192200.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Seita.9G259300.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Sobic.001G252800.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Sobic.002G421900.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Sobic.003G121400.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Sobic.009G014400.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Sopen02g016410	No alias	Dof domain, zinc finger	0.16	Orthogroups_2024-Update
Sopen02g034910	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen05g003730	No alias	Dof domain, zinc finger	0.1	Orthogroups_2024-Update
Sopen06g026650	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Predicted GO
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006595	polyamine metabolic process	IEP	Predicted GO
BP	GO:0006596	polyamine biosynthetic process	IEP	Predicted GO
BP	GO:0006597	spermine biosynthetic process	IEP	Predicted GO
BP	GO:0006749	glutathione metabolic process	IEP	Predicted GO
BP	GO:0006751	glutathione catabolic process	IEP	Predicted GO
BP	GO:0008215	spermine metabolic process	IEP	Predicted GO
BP	GO:0008216	spermidine metabolic process	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
BP	GO:0008295	spermidine biosynthetic process	IEP	Predicted GO
BP	GO:0009309	amine biosynthetic process	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Predicted GO
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
BP	GO:0043171	peptide catabolic process	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
BP	GO:0044273	sulfur compound catabolic process	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
BP	GO:0051187	cofactor catabolic process	IEP	Predicted GO
BP	GO:0097164	ammonium ion metabolic process	IEP	Predicted GO
MF	GO:2001070	starch binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	112	168

External Links

No external refs found!

Solyc05g007880

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation