evm.model.tig00000944.18


Description : (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) - Volvox carteri & (at3g53650 : 119.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G37470.1); Has 3251 Blast hits to 3245 proteins in 328 species: Archae - 0; Bacteria - 2; Metazoa - 2223; Fungi - 201; Plants - 465; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000944.18
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
A4A49_60323 No alias putative histone h2b.1 0.01 Orthogroups_2024-Update
At1g07790 No alias Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4] 0.02 Orthogroups_2024-Update
Bradi2g27710 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Brara.B01057.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Brara.G01398.1 No alias histone *(H2B) 0.01 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Brara.J01359.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G141600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G141700 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G141800 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G058440.4 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
LOC_Os01g05630 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.01 Orthogroups_2024-Update
LOC_Os08g38300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.01 Orthogroups_2024-Update
MA_1040421g0010 No alias (at3g45980 : 114.0) Encodes a histone 2B (H2B) protein.... 0.01 Orthogroups_2024-Update
MA_111473g0010 No alias (at3g46030 : 185.0) HTB11; FUNCTIONS IN: DNA binding;... 0.01 Orthogroups_2024-Update
Mp4g13450.1 No alias histone (H2B) 0.01 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update
PSME_00055887-RA No alias (at5g22880 : 165.0) Encodes a histone 2B (H2B) protein.... 0.01 Orthogroups_2024-Update
Potri.010G231300 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.05 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.02 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.04 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.06 Orthogroups_2024-Update
Solyc06g074780 No alias Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) 0.04 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.05 Orthogroups_2024-Update
Solyc06g075800 No alias Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.07 Orthogroups_2024-Update
Solyc11g007930 No alias Histone H2B (AHRD V3.3 *** K4D554_SOLLC) 0.05 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.06 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g003800 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_498.4 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000444 MIS12/MIND type complex IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
CC GO:0000776 kinetochore IEP Predicted GO
CC GO:0000818 nuclear MIS12/MIND complex IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005815 microtubule organizing center IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034453 microtubule anchoring IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 8 105
No external refs found!