Description : (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) - Volvox carteri & (at3g53650 : 119.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G37470.1); Has 3251 Blast hits to 3245 proteins in 328 species: Archae - 0; Bacteria - 2; Metazoa - 2223; Fungi - 201; Plants - 465; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)
Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Cyanophora release: evm.model.tig00000944.18 | |
Cluster | HCCA clusters: Cluster_4 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_60323 | No alias | putative histone h2b.1 | 0.01 | Orthogroups_2024-Update | |
At1g07790 | No alias | Histone H2B.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQQ4] | 0.02 | Orthogroups_2024-Update | |
Bradi2g27710 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Brara.B01057.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
Brara.F01827.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
Brara.G01398.1 | No alias | histone *(H2B) | 0.01 | Orthogroups_2024-Update | |
Brara.I03652.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
Brara.J01359.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Cre06.g264900 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre12.g505600 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Glyma.10G198500 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.11G141600 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.11G141700 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.11G141800 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Glyma.20G191600 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G058440.4 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g05630 | No alias | Core histone H2A/H2B/H3/H4 domain containing protein,... | 0.01 | Orthogroups_2024-Update | |
LOC_Os08g38300 | No alias | Core histone H2A/H2B/H3/H4 domain containing protein,... | 0.01 | Orthogroups_2024-Update | |
MA_1040421g0010 | No alias | (at3g45980 : 114.0) Encodes a histone 2B (H2B) protein.... | 0.01 | Orthogroups_2024-Update | |
MA_111473g0010 | No alias | (at3g46030 : 185.0) HTB11; FUNCTIONS IN: DNA binding;... | 0.01 | Orthogroups_2024-Update | |
Mp4g13450.1 | No alias | histone (H2B) | 0.01 | Orthogroups_2024-Update | |
PSME_00000376-RA | No alias | (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... | 0.01 | Orthogroups_2024-Update | |
PSME_00055887-RA | No alias | (at5g22880 : 165.0) Encodes a histone 2B (H2B) protein.... | 0.01 | Orthogroups_2024-Update | |
Potri.010G231300 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Solyc02g038690 | No alias | Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) | 0.05 | Orthogroups_2024-Update | |
Solyc03g071620 | No alias | Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) | 0.02 | Orthogroups_2024-Update | |
Solyc05g055440 | No alias | Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) | 0.04 | Orthogroups_2024-Update | |
Solyc06g005390 | No alias | Histone H2B (AHRD V3.3 *** K4C323_SOLLC) | 0.06 | Orthogroups_2024-Update | |
Solyc06g074780 | No alias | Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) | 0.04 | Orthogroups_2024-Update | |
Solyc06g074790 | No alias | Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) | 0.05 | Orthogroups_2024-Update | |
Solyc06g075800 | No alias | Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Solyc11g007920 | No alias | Histone H2B (AHRD V3.3 *** K4D553_SOLLC) | 0.07 | Orthogroups_2024-Update | |
Solyc11g007930 | No alias | Histone H2B (AHRD V3.3 *** K4D554_SOLLC) | 0.05 | Orthogroups_2024-Update | |
Solyc11g066430 | No alias | histone H2B | 0.06 | Orthogroups_2024-Update | |
Sopen06g031230 | No alias | Core histone H2A/H2B/H3/H4 | 0.03 | Orthogroups_2024-Update | |
Sopen11g003800 | No alias | Core histone H2A/H2B/H3/H4 | 0.03 | Orthogroups_2024-Update | |
Sopen11g026180 | No alias | Core histone H2A/H2B/H3/H4 | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_498.4 | No alias | (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEA | InterProScan predictions |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Predicted GO |
BP | GO:0000278 | mitotic cell cycle | IEP | Predicted GO |
CC | GO:0000444 | MIS12/MIND type complex | IEP | Predicted GO |
CC | GO:0000775 | chromosome, centromeric region | IEP | Predicted GO |
CC | GO:0000776 | kinetochore | IEP | Predicted GO |
CC | GO:0000818 | nuclear MIS12/MIND complex | IEP | Predicted GO |
MF | GO:0003774 | motor activity | IEP | Predicted GO |
MF | GO:0003777 | microtubule motor activity | IEP | Predicted GO |
MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
CC | GO:0005815 | microtubule organizing center | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006928 | movement of cell or subcellular component | IEP | Predicted GO |
BP | GO:0006996 | organelle organization | IEP | Predicted GO |
BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
BP | GO:0007017 | microtubule-based process | IEP | Predicted GO |
BP | GO:0007018 | microtubule-based movement | IEP | Predicted GO |
BP | GO:0007049 | cell cycle | IEP | Predicted GO |
BP | GO:0007059 | chromosome segregation | IEP | Predicted GO |
MF | GO:0008017 | microtubule binding | IEP | Predicted GO |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
MF | GO:0015631 | tubulin binding | IEP | Predicted GO |
BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
MF | GO:0016209 | antioxidant activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
MF | GO:0019207 | kinase regulator activity | IEP | Predicted GO |
MF | GO:0019887 | protein kinase regulator activity | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
CC | GO:0031262 | Ndc80 complex | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034453 | microtubule anchoring | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
BP | GO:0051276 | chromosome organization | IEP | Predicted GO |
BP | GO:0051301 | cell division | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
CC | GO:0098687 | chromosomal region | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007125 | Histone_H2A/H2B/H3 | 8 | 105 |
No external refs found! |