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- Cyanophora paradoxa
- Sequence
- evm.model.tig00000970.30
evm.model.tig00000970.30
Description : (at1g08260 : 1115.0) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1); Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331; Bacteria - 603; Metazoa - 305; Fungi - 291; Plants - 83; Viruses - 58; Other Eukaryotes - 340 (source: NCBI BLink). & (reliability: 2230.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Cyanophora release: evm.model.tig00000970.30 | |
Cluster | HCCA clusters: Cluster_6 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
Cre03.g179961 | No alias | DNA polymerase epsilon catalytic subunit | 0.03 | Orthogroups_2024-Update | |
Kfl00061_0280 | kfl00061_0280_v1.1 | (at1g08260 : 1660.0) Similar to POL2A, DNA polymerase... | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | IEA | InterProScan predictions |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003676 | nucleic acid binding | None | Extended |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
CC | GO:0005575 | cellular_component | None | Extended |
CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0006259 | DNA metabolic process | None | Extended |
BP | GO:0006260 | DNA replication | IEA | InterProScan predictions |
BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
BP | GO:0009058 | biosynthetic process | None | Extended |
BP | GO:0009059 | macromolecule biosynthetic process | None | Extended |
BP | GO:0009987 | cellular process | None | Extended |
MF | GO:0016740 | transferase activity | None | Extended |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | None | Extended |
MF | GO:0016779 | nucleotidyltransferase activity | None | Extended |
MF | GO:0034061 | DNA polymerase activity | None | Extended |
BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
BP | GO:0034645 | cellular macromolecule biosynthetic process | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043169 | cation binding | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
CC | GO:0043226 | organelle | None | Extended |
CC | GO:0043227 | membrane-bounded organelle | None | Extended |
CC | GO:0043229 | intracellular organelle | None | Extended |
CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
BP | GO:0044237 | cellular metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
BP | GO:0044249 | cellular biosynthetic process | None | Extended |
BP | GO:0044260 | cellular macromolecule metabolic process | None | Extended |
CC | GO:0044424 | intracellular part | None | Extended |
CC | GO:0044464 | cell part | None | Extended |
BP | GO:0046483 | heterocycle metabolic process | None | Extended |
MF | GO:0046872 | metal ion binding | None | Extended |
MF | GO:0046914 | transition metal ion binding | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0140097 | catalytic activity, acting on DNA | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1901576 | organic substance biosynthetic process | None | Extended |
Type | GO Term | Name | Evidence | Source |
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005667 | transcription factor complex | IEP | Predicted GO |
BP | GO:0006270 | DNA replication initiation | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
MF | GO:0008658 | penicillin binding | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0033218 | amide binding | IEP | Predicted GO |
MF | GO:0033293 | monocarboxylic acid binding | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR006134 | DNA-dir_DNA_pol_B_multi_dom | 750 | 962 |
IPR013697 | DNA_pol_e_suA_C | 1475 | 1752 |
IPR006133 | DNA-dir_DNA_pol_B_exonuc | 45 | 372 |