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  5. Solyc05g009180

Solyc05g009180


Description : LOW QUALITY:Zinc finger family protein (AHRD V3.3 *** B9HWF8_POPTR)


Gene families : OG_42_0000024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g009180
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
110103 No alias zinc-finger protein 1 0.02 Orthogroups_2024-Update
A4A49_36210 No alias zinc finger protein 5 0.03 Orthogroups_2024-Update
At3g23130 No alias Uncharacterized protein At3g23130 (Fragment)... 0.03 Orthogroups_2024-Update
Bradi1g22820 No alias zinc finger protein 7 0.04 Orthogroups_2024-Update
Bradi1g76580 No alias zinc finger protein 4 0.03 Orthogroups_2024-Update
Brara.F02973.1 No alias C2H2 subclass ZFP transcription factor 0.06 Orthogroups_2024-Update
Glyma.03G160700 No alias zinc finger protein 11 0.03 Orthogroups_2024-Update
Glyma.04G127600 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G059500 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os05g14130 No alias ZOS5-05 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
Potri.005G221400 No alias zinc finger protein 11 0.03 Orthogroups_2024-Update
Potri.008G121200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G037100 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G123900 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G035000.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Seita.3G391200.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Seita.9G388000.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Seita.9G388200.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Sobic.008G173300.1 No alias C2H2 subclass ZFP transcription factor 0.04 Orthogroups_2024-Update
Solyc10g078990 No alias LOW QUALITY:Zinc finger family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!