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  5. Solyc05g009400

Solyc05g009400


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HJ37_POPTR)


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g009400
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Bradi4g03700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A01281.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I01471.1 No alias RNA editing factor *(MEF9) 0.03 Orthogroups_2024-Update
GRMZM2G077320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G096900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G022100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G024100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G066950.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_356g0010 No alias (at3g23330 : 487.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Potri.004G125500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Sobic.007G182600.2 No alias Unknown function 0.07 Orthogroups_2024-Update
Sopen01g039950 No alias PPR repeat family 0.11 Orthogroups_2024-Update
Sopen05g005200 No alias PPR repeat 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 378 424
IPR002885 Pentatricopeptide_repeat 278 305
IPR002885 Pentatricopeptide_repeat 216 244
IPR002885 Pentatricopeptide_repeat 157 183
IPR002885 Pentatricopeptide_repeat 452 476
IPR002885 Pentatricopeptide_repeat 86 113
IPR002885 Pentatricopeptide_repeat 185 212
IPR002885 Pentatricopeptide_repeat 248 277
No external refs found!