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  5. evm.model.tig00001085.4

evm.model.tig00001085.4


Description : (p16866|h2a4_volca : 154.0) Histone H2A-IV - Volvox carteri & (at3g20670 : 147.0) Encodes HTA13, a histone H2A protein.; histone H2A 13 (HTA13); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 10 (TAIR:AT1G51060.1); Has 3900 Blast hits to 3895 proteins in 360 species: Archae - 0; Bacteria - 0; Metazoa - 2556; Fungi - 297; Plants - 612; Viruses - 4; Other Eukaryotes - 431 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00001085.4
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
170948 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g66370 No alias histone H2A 6 0.01 Orthogroups_2024-Update
Brara.A01693.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Brara.F02852.1 No alias histone *(H2A) 0.01 Orthogroups_2024-Update
Brara.H02855.1 No alias histone *(H2A) 0.01 Orthogroups_2024-Update
Glyma.03G148100 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.15G040200 No alias histone H2A 12 0.01 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.15G040400 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.01 Orthogroups_2024-Update
HORVU6Hr1G006090.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G006130.6 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Potri.013G028900 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
Sopen06g035820 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0017134 fibroblast growth factor binding IEP Predicted GO
MF GO:0019838 growth factor binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 92
IPR032454 Histone_H2A_C 95 128
No external refs found!