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  5. evm.model.tig00001098.5

evm.model.tig00001098.5


Description : (at4g31300 : 209.0) Encodes 20S proteasome subunit PBA1 (PBA1).; PBA1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to zinc ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 (TAIR:AT5G40580.2). & (p93395|psb6_tobac : 206.0) Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) - Nicotiana tabacum (Common tobacco) & (reliability: 418.0) & (original description: no original description)


Gene families : OG_42_0003705 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00001098.5
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
A4A49_15043 No alias proteasome subunit beta type-6 0.02 Orthogroups_2024-Update
At4g31300 No alias Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2] 0.05 Orthogroups_2024-Update
Bradi1g51300 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.01 Orthogroups_2024-Update
Brara.A00639.1 No alias beta-type-1 component *(PBA) of 26S proteasome 0.02 Orthogroups_2024-Update
Brara.H01358.1 No alias beta-type-1 component *(PBA) of 26S proteasome 0.02 Orthogroups_2024-Update
Brara.K01663.1 No alias beta-type-1 component *(PBA) of 26S proteasome 0.01 Orthogroups_2024-Update
Cre06.g279000 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.14 Orthogroups_2024-Update
Cre12.g531100 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.05 Orthogroups_2024-Update
HORVU7Hr1G018660.1 No alias beta-type-1 component *(PBA) of 26S proteasome 0.05 Orthogroups_2024-Update
Kfl00028_0160 kfl00028_0160_v1.1 (at4g31300 : 267.0) Encodes 20S proteasome subunit PBA1... 0.06 Orthogroups_2024-Update
LOC_Os02g53060 No alias peptidase, T1 family, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g04800 No alias peptidase, T1 family, putative, expressed 0.03 Orthogroups_2024-Update
Mp6g09980.1 No alias component beta type-1 of 26S proteasome 0.07 Orthogroups_2024-Update
PSME_00000728-RA No alias (at4g31300 : 100.0) Encodes 20S proteasome subunit PBA1... 0.01 Orthogroups_2024-Update
Potri.006G077900 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.06 Orthogroups_2024-Update
Potri.018G145900 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.06 Orthogroups_2024-Update
Pp1s3_23V6 No alias proteasome subunit beta type 0.04 Orthogroups_2024-Update
Seita.4G028500.1 No alias beta-type-1 component *(PBA) of 26S proteasome 0.07 Orthogroups_2024-Update
Seita.9G066900.1 No alias beta-type-1 component *(PBA) of 26S proteasome 0.05 Orthogroups_2024-Update
Solyc07g016200 No alias Proteasome subunit beta type (AHRD V3.3 *** K4CCD7_SOLLC) 0.02 Orthogroups_2024-Update
Sopen07g005910 No alias Proteasome subunit 0.07 Orthogroups_2024-Update
evm.model.contig_4442.11 No alias (at4g31300 : 219.0) Encodes 20S proteasome subunit PBA1... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA InterProScan predictions
CC GO:0005839 proteasome core complex IEA InterProScan predictions
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Predicted GO
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000229 cytoplasmic chromosome IEP Predicted GO
CC GO:0000262 mitochondrial chromosome IEP Predicted GO
MF GO:0000339 RNA cap binding IEP Predicted GO
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Predicted GO
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0007005 mitochondrion organization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 64 244
No external refs found!