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  5. Solyc05g010620

Solyc05g010620


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HWT0_POPTR)


Gene families : OG_42_0009630 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009630_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g010620
Cluster HCCA clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
At1g68930 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Bradi3g00900 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Seita.9G413600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G241000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen05g006430 No alias PPR repeat 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
MF GO:0004555 alpha,alpha-trehalase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0015927 trehalase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 324 372
IPR002885 Pentatricopeptide_repeat 223 270
IPR002885 Pentatricopeptide_repeat 425 473
IPR002885 Pentatricopeptide_repeat 34 56
IPR002885 Pentatricopeptide_repeat 62 90
IPR002885 Pentatricopeptide_repeat 500 524
IPR002885 Pentatricopeptide_repeat 93 122
IPR002885 Pentatricopeptide_repeat 169 194
IPR002885 Pentatricopeptide_repeat 400 423
IPR032867 DYW_dom 599 723
No external refs found!