evm.model.tig00001299.2

Description : (at5g47930 : 145.0) Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ribosomal protein S27 (TAIR:AT3G61110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q96564|rs27_horvu : 137.0) 40S ribosomal protein S27 (Manganese efficiency-related protein 1) - Hordeum vulgare (Barley) & (reliability: 290.0) & (original description: no original description)

Gene families : OG_42_0001909 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001909_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00001299.2
Cluster	HCCA clusters: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
163947	No alias	ribosomal protein S27	0.06	Orthogroups_2024-Update
A4A49_15619	No alias	40s ribosomal protein s27-2	0.11	Orthogroups_2024-Update
At2g45710	No alias	40S ribosomal protein S27-1...	0.04	Orthogroups_2024-Update
At3g61110	No alias	40S ribosomal protein S27...	0.03	Orthogroups_2024-Update
At5g47930	No alias	40S ribosomal protein S27-3...	0.05	Orthogroups_2024-Update
Bradi3g43475	No alias	ribosomal protein S27	0.11	Orthogroups_2024-Update
Bradi5g08453	No alias	ribosomal protein S27	0.13	Orthogroups_2024-Update
Brara.B03416.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Brara.F03041.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Brara.G01908.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.I00365.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.I04203.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Cre12.g529400	No alias	ribosomal protein S27	0.16	Orthogroups_2024-Update
GRMZM2G066222	No alias	ribosomal protein S27	0.03	Orthogroups_2024-Update
Glyma.02G067400	No alias	ribosomal protein S27	0.03	Orthogroups_2024-Update
Glyma.16G046500	No alias	ribosomal protein S27	0.06	Orthogroups_2024-Update
Glyma.19G105700	No alias	ribosomal protein S27	0.06	Orthogroups_2024-Update
HORVU4Hr1G014130.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
HORVU4Hr1G074270.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
HORVU7Hr1G112740.4	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
LOC_Os02g27769	No alias	40S ribosomal protein S27, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g32710	No alias	40S ribosomal protein S27, putative, expressed	0.03	Orthogroups_2024-Update
MA_87055g0010	No alias	(at3g61110 : 146.0) Arabidopsis ribosomal protein;...	0.12	Orthogroups_2024-Update
Mp5g09510.1	No alias	component RPS27 of SSU proteome	0.05	Orthogroups_2024-Update
PSME_00029823-RA	No alias	(at3g61110 : 146.0) Arabidopsis ribosomal protein;...	0.09	Orthogroups_2024-Update
Potri.001G069100	No alias	ribosomal protein S27	0.02	Orthogroups_2024-Update
Potri.003G161200	No alias	ribosomal protein S27	0.08	Orthogroups_2024-Update
Potri.006G192900	No alias	ribosomal protein S27	0.04	Orthogroups_2024-Update
Pp1s165_39V6	No alias	40s ribosomal protein	0.29	Orthogroups_2024-Update
Pp1s179_13V6	No alias	40s ribosomal protein	0.02	Orthogroups_2024-Update
Pp1s17_304V6	No alias	40s ribosomal protein	0.11	Orthogroups_2024-Update
Pp1s63_161V6	No alias	40s ribosomal protein	0.17	Orthogroups_2024-Update
Seita.1G160500.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Sobic.001G091801.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.16	Orthogroups_2024-Update
Sobic.004G145801.1	No alias	component *(eS27) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Solyc01g008090	No alias	40S ribosomal protein S27 (AHRD V3.3 - M0TJU4_MUSAM)	0.18	Orthogroups_2024-Update
Sopen01g003640	No alias	Ribosomal protein S27	0.21	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000592	Ribosomal_S27e	30	84

External Links

No external refs found!

evm.model.tig00001299.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation