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  5. Solyc05g012040

Solyc05g012040


Description : Squamosa promoter binding protein 6b


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g012040
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
Bradi1g26720 No alias squamosa promoter binding protein-like 4 0.03 Orthogroups_2024-Update
Bradi3g41250 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.01G075900 No alias squamosa promoter binding protein-like 8 0.04 Orthogroups_2024-Update
LOC_Os04g46580 No alias OsSPL7 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g32170 No alias OsSPL13 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
MA_3179g0020 No alias (at1g02065 : 176.0) Encodes an SBP-box gene, a member of... 0.02 Orthogroups_2024-Update
MA_47367g0010 No alias (at1g02065 : 173.0) Encodes an SBP-box gene, a member of... 0.04 Orthogroups_2024-Update
PSME_00040770-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00041406-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00053503-RA No alias (at1g02065 : 156.0) Encodes an SBP-box gene, a member of... 0.02 Orthogroups_2024-Update
Seita.3G022100.1 No alias SBP-type transcription factor 0.04 Orthogroups_2024-Update
Seita.6G223300.1 No alias SBP-type transcription factor 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 234 307
No external refs found!