evm.model.tig00001408.18

Description : (at4g19490 : 125.0) Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.; VPS54; INVOLVED IN: retrograde transport, endosome to Golgi; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515), Vps54-like (InterPro:IPR012501); Has 471 Blast hits to 377 proteins in 168 species: Archae - 2; Bacteria - 4; Metazoa - 149; Fungi - 188; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)

Gene families : OG_42_0003381 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003381_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00001408.18
Cluster	HCCA clusters: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc02g030110	No alias	No description available	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	InterProScan predictions
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
CC	GO:0030117	membrane coat	IEP	Predicted GO
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	Predicted GO
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Predicted GO
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR012501	Vps54_C	275	405

External Links

No external refs found!

evm.model.tig00001408.18

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation