Solyc05g013860


Description : sieve element occlusion protein (AHRD V3.3 *** AT1G67790.1)


Gene families : OG_42_0001319 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001319_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g013860
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
A4A49_03528 No alias protein sieve element occlusion b 0.07 Orthogroups_2024-Update
A4A49_20366 No alias protein sieve element occlusion b 0.08 Orthogroups_2024-Update
A4A49_33052 No alias protein sieve element occlusion b 0.07 Orthogroups_2024-Update
Potri.001G340200 No alias Function unknown 0.03 Orthogroups_2024-Update
Potri.012G090400 No alias Function unknown 0.03 Orthogroups_2024-Update
Potri.T067300 No alias Function unknown 0.04 Orthogroups_2024-Update
Sopen03g030910 No alias Sieve element occlusion N-terminus 0.08 Orthogroups_2024-Update
Sopen05g008770 No alias Sieve element occlusion N-terminus 0.08 Orthogroups_2024-Update
Sopen05g008800 No alias Sieve element occlusion N-terminus 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027942 SEO_N 19 292
IPR027944 SEO_C 455 686
No external refs found!