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  5. evm.model.tig00020554.36

evm.model.tig00020554.36


Description : (at4g38600 : 291.0) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.; KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink). & (reliability: 582.0) & (original description: no original description)


Gene families : OG_42_0001466 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001466_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020554.36
Cluster HCCA clusters: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Bradi2g22927 No alias ubiquitin-protein ligase 4 0.02 Orthogroups_2024-Update
Brara.B00068.1 No alias E3 ubiquitin ligase *(UPL3) 0.02 Orthogroups_2024-Update
Glyma.04G004000 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.01 Orthogroups_2024-Update
LOC_Os05g38830 No alias HECT-domain domain containing protein, expressed 0.01 Orthogroups_2024-Update
PSME_00000237-RA No alias (at4g38600 : 1659.0) encodes a member of HECT ubiquitin... 0.01 Orthogroups_2024-Update
Potri.004G174700 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.01 Orthogroups_2024-Update
Pp1s263_1V6 No alias hect ubiquitin-protein 0.03 Orthogroups_2024-Update
Sobic.009G166300.1 No alias E3 ubiquitin ligase *(UPL3) 0.01 Orthogroups_2024-Update
Solyc09g007310 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** A0A072VW29_MEDTR) 0.01 Orthogroups_2024-Update
Solyc10g055450 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** G7JNF2_MEDTR) 0.01 Orthogroups_2024-Update
Sopen10g025230 No alias HECT-domain (ubiquitin-transferase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000569 HECT_dom 342 657
No external refs found!