Description : (at3g56510 : 95.5) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 191.0) & (original description: no original description)
Gene families : OG_42_0004646 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004646_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Cyanophora release: evm.model.tig00020554.50 | |
Cluster | HCCA clusters: Cluster_78 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Brara.I03887.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Cre06.g264500 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000075 | cell cycle checkpoint | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
MF | GO:0004615 | phosphomannomutase activity | IEP | Predicted GO |
MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Predicted GO |
MF | GO:0005048 | signal sequence binding | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0006413 | translational initiation | IEP | Predicted GO |
BP | GO:0006605 | protein targeting | IEP | Predicted GO |
BP | GO:0006612 | protein targeting to membrane | IEP | Predicted GO |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Predicted GO |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0007088 | regulation of mitotic nuclear division | IEP | Predicted GO |
BP | GO:0007093 | mitotic cell cycle checkpoint | IEP | Predicted GO |
BP | GO:0007094 | mitotic spindle assembly checkpoint | IEP | Predicted GO |
BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
MF | GO:0008312 | 7S RNA binding | IEP | Predicted GO |
BP | GO:0009225 | nucleotide-sugar metabolic process | IEP | Predicted GO |
BP | GO:0009226 | nucleotide-sugar biosynthetic process | IEP | Predicted GO |
BP | GO:0009298 | GDP-mannose biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0010564 | regulation of cell cycle process | IEP | Predicted GO |
BP | GO:0010639 | negative regulation of organelle organization | IEP | Predicted GO |
BP | GO:0010948 | negative regulation of cell cycle process | IEP | Predicted GO |
BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0019673 | GDP-mannose metabolic process | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022402 | cell cycle process | IEP | Predicted GO |
BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | Predicted GO |
BP | GO:0031577 | spindle checkpoint | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
BP | GO:0033043 | regulation of organelle organization | IEP | Predicted GO |
BP | GO:0033044 | regulation of chromosome organization | IEP | Predicted GO |
BP | GO:0033045 | regulation of sister chromatid segregation | IEP | Predicted GO |
BP | GO:0033046 | negative regulation of sister chromatid segregation | IEP | Predicted GO |
BP | GO:0033047 | regulation of mitotic sister chromatid segregation | IEP | Predicted GO |
BP | GO:0033048 | negative regulation of mitotic sister chromatid segregation | IEP | Predicted GO |
MF | GO:0033218 | amide binding | IEP | Predicted GO |
BP | GO:0033365 | protein localization to organelle | IEP | Predicted GO |
BP | GO:0034613 | cellular protein localization | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
MF | GO:0042277 | peptide binding | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
BP | GO:0045047 | protein targeting to ER | IEP | Predicted GO |
BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
BP | GO:0045839 | negative regulation of mitotic nuclear division | IEP | Predicted GO |
BP | GO:0045841 | negative regulation of mitotic metaphase/anaphase transition | IEP | Predicted GO |
BP | GO:0045930 | negative regulation of mitotic cell cycle | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
CC | GO:0048500 | signal recognition particle | IEP | Predicted GO |
BP | GO:0048519 | negative regulation of biological process | IEP | Predicted GO |
BP | GO:0048523 | negative regulation of cellular process | IEP | Predicted GO |
BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051129 | negative regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051726 | regulation of cell cycle | IEP | Predicted GO |
BP | GO:0051783 | regulation of nuclear division | IEP | Predicted GO |
BP | GO:0051784 | negative regulation of nuclear division | IEP | Predicted GO |
BP | GO:0051983 | regulation of chromosome segregation | IEP | Predicted GO |
BP | GO:0051985 | negative regulation of chromosome segregation | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0070727 | cellular macromolecule localization | IEP | Predicted GO |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Predicted GO |
BP | GO:0071173 | spindle assembly checkpoint | IEP | Predicted GO |
BP | GO:0071174 | mitotic spindle checkpoint | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Predicted GO |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Predicted GO |
BP | GO:0072657 | protein localization to membrane | IEP | Predicted GO |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Predicted GO |
BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | Predicted GO |
BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Predicted GO |
BP | GO:1901991 | negative regulation of mitotic cell cycle phase transition | IEP | Predicted GO |
BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | Predicted GO |
BP | GO:1902100 | negative regulation of metaphase/anaphase transition of cell cycle | IEP | Predicted GO |
BP | GO:1903047 | mitotic cell cycle process | IEP | Predicted GO |
BP | GO:1905818 | regulation of chromosome separation | IEP | Predicted GO |
BP | GO:1905819 | negative regulation of chromosome separation | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
BP | GO:2000816 | negative regulation of mitotic sister chromatid separation | IEP | Predicted GO |
BP | GO:2001251 | negative regulation of chromosome organization | IEP | Predicted GO |
No InterPro domains available for this sequence
No external refs found! |