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  5. evm.model.tig00020554.8

evm.model.tig00020554.8


Description : (at2g39130 : 153.0) Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G54830.1); Has 5002 Blast hits to 4966 proteins in 291 species: Archae - 22; Bacteria - 61; Metazoa - 1689; Fungi - 998; Plants - 1489; Viruses - 3; Other Eukaryotes - 740 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description)


Gene families : OG_42_0000219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000219_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020554.8
Cluster HCCA clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g40360 No alias amino acid transporter family protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os01g40410 No alias transmembrane amino acid transporter protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os04g38670 No alias amino acid transporter family protein, putative, expressed 0.01 Orthogroups_2024-Update
Potri.008G036300 No alias Transmembrane amino acid transporter family protein 0.01 Orthogroups_2024-Update
Sopen03g009910 No alias Transmembrane amino acid transporter protein 0.01 Orthogroups_2024-Update
Sopen09g036300 No alias Transmembrane amino acid transporter protein 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR013057 AA_transpt_TM 11 234
No external refs found!