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  5. Solyc05g015390

Solyc05g015390


Description : Rubber elongation factor protein (AHRD V3.3 *** A0A072TUR8_MEDTR)


Gene families : OG_42_0001183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g015390
Cluster HCCA clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
At3g05500 No alias REF/SRPP-like protein At3g05500... 0.03 Orthogroups_2024-Update
Bradi2g35600 No alias Rubber elongation factor protein (REF) 0.05 Orthogroups_2024-Update
Kfl00024_0290 kfl00024_0290_v1.1 (at2g47780 : 98.6) Rubber elongation factor protein... 0.02 Orthogroups_2024-Update
LOC_Os07g47510 No alias stress-related protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10431316g0010 No alias (at3g05500 : 184.0) Rubber elongation factor protein... 0.02 Orthogroups_2024-Update
Sobic.002G412800.1 No alias lipid droplet-associated factor *(LDAP) 0.06 Orthogroups_2024-Update
Sopen05g010680 No alias Rubber elongation factor protein (REF) 0.16 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR008802 REF 12 210
No external refs found!