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  5. evm.model.tig00020697.31

evm.model.tig00020697.31


Description : (at5g22440 : 146.0) Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT1G08360.1); Has 4875 Blast hits to 4874 proteins in 1649 species: Archae - 280; Bacteria - 2611; Metazoa - 459; Fungi - 187; Plants - 522; Viruses - 0; Other Eukaryotes - 816 (source: NCBI BLink). & (q9sw75|rl10a_chlre : 125.0) 60S ribosomal protein L10a - Chlamydomonas reinhardtii & (reliability: 292.0) & (original description: no original description)


Gene families : OG_42_0001635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001635_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020697.31
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
230302 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
A4A49_21782 No alias 60s ribosomal protein l10a-1 0.03 Orthogroups_2024-Update
Bradi2g55600 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Bradi3g42800 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Brara.B00972.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.C01003.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.D01641.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.G01318.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.J01470.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Cre02.g101350 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Glyma.12G184900 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Glyma.13G316400 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
Glyma.18G026100 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
Glyma.19G194922 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
HORVU3Hr1G084310.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
HORVU4Hr1G001350.5 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU7Hr1G059090.5 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00440_0070 kfl00440_0070_v1.... (at2g27530 : 310.0) Encodes ribosomal protein L10aP.... 0.03 Orthogroups_2024-Update
MA_12000g0010 No alias (at5g22440 : 343.0) Ribosomal protein L1p/L10e family;... 0.02 Orthogroups_2024-Update
PSME_00037360-RA No alias (at1g08360 : 341.0) Ribosomal protein L1p/L10e family;... 0.04 Orthogroups_2024-Update
Potri.004G202832 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Potri.007G034800 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Potri.007G035600 No alias Ribosomal protein L1p/L10e family 0.02 Orthogroups_2024-Update
Pp1s18_121V6 No alias 60s ribosomal protein l10a-1 0.03 Orthogroups_2024-Update
Seita.2G133400.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Seita.5G389700.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.003G363800.2 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Solyc01g009520 No alias Ribosomal protein (AHRD V3.3 *** K4ATE8_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g074300 No alias 5'-3' exonuclease family protein (AHRD V3.3 --* AT3G28030.4) 0.02 Orthogroups_2024-Update
Solyc11g068420 No alias Ribosomal protein (AHRD V3.3 *** M1CHW0_SOLTU) 0.04 Orthogroups_2024-Update
Sopen01g005070 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Sopen06g030750 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Sopen11g027130 No alias Ribosomal protein L1p/L10e family 0.07 Orthogroups_2024-Update
evm.model.contig_2315.2 No alias (at2g27530 : 237.0) Encodes ribosomal protein L10aP.... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0034464 BBSome IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044441 ciliary part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044463 cell projection part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
CC GO:0120038 plasma membrane bounded cell projection part IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 25 116
No external refs found!