Solyc05g016120

Description : Photosystem II protein D1 (AHRD V3.3 *-* PSBA_BARVE)

Gene families : OG_42_0001749 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001749_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc05g016120
Cluster	HCCA clusters: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
236852	No alias	photosystem II reaction center protein A	0.02	Orthogroups_2024-Update
Bradi4g19720	No alias	photosystem II reaction center protein A	0.04	Orthogroups_2024-Update
Bradi5g10967	No alias	photosystem II reaction center protein A	0.04	Orthogroups_2024-Update
HORVU1Hr1G017870.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
HORVU2Hr1G062060.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU2Hr1G121820.5	No alias	component *(PsbA/D1) of PS-II reaction center complex	0.04	Orthogroups_2024-Update
HORVU3Hr1G004790.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Mp3g12650.1	No alias	Photosystem II protein D1 OS=Marchantia polymorpha...	0.04	Orthogroups_2024-Update
Mp8g01990.1	No alias	no hits & (original description: none)	0.05	Orthogroups_2024-Update
PSME_00003759-RA	No alias	(p69551\|psba_pinth : 308.0) Photosystem Q(B) protein (32...	0.03	Orthogroups_2024-Update
PSME_00021857-RA	No alias	(p69551\|psba_pinth : 509.0) Photosystem Q(B) protein (32...	0.03	Orthogroups_2024-Update
Seita.J017900.1	No alias	component *(PsbA/D1) of PS-II reaction center complex	0.03	Orthogroups_2024-Update
Sopen01g008050	No alias	Photosynthetic reaction centre protein	0.14	Orthogroups_2024-Update
Sopen02g002740	No alias	Photosynthetic reaction centre protein	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009522	photosystem I	IEA	InterProScan predictions
CC	GO:0009579	thylakoid	IEA	InterProScan predictions
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	InterProScan predictions
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0019684	photosynthesis, light reaction	IEA	InterProScan predictions
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEA	InterProScan predictions
BP	GO:0055114	oxidation-reduction process	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
BP	GO:0009611	response to wounding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003359	PSI_Ycf4_assembly	38	68
IPR003359	PSI_Ycf4_assembly	2	39
IPR000484	Photo_RC_L/M	87	222

External Links

No external refs found!

Solyc05g016120

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation