1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. evm.model.tig00020848.22

evm.model.tig00020848.22


Description : (at1g63780 : 310.0) Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies.; IMP4; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT4G01560.1); Has 804 Blast hits to 801 proteins in 232 species: Archae - 12; Bacteria - 0; Metazoa - 253; Fungi - 267; Plants - 106; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink). & (reliability: 620.0) & (original description: no original description)


Gene families : OG_42_0005915 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005915_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020848.22
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
A4A49_21538 No alias hypothetical protein 0.02 Orthogroups_2024-Update
At1g63780 No alias IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3] 0.03 Orthogroups_2024-Update
Bradi3g16690 No alias Ribosomal RNA processing Brix domain protein 0.02 Orthogroups_2024-Update
Brara.I01380.1 No alias SSU processome assembly factor *(IMP4) 0.02 Orthogroups_2024-Update
Cre10.g454100 No alias Ribosomal RNA processing Brix domain protein 0.07 Orthogroups_2024-Update
GRMZM2G066555 No alias Ribosomal RNA processing Brix domain protein 0.02 Orthogroups_2024-Update
Glyma.11G152600 No alias Ribosomal RNA processing Brix domain protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G071450.1 No alias SSU processome assembly factor *(IMP4) 0.06 Orthogroups_2024-Update
LOC_Os08g05880 No alias Brix domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.003G201100 No alias Ribosomal RNA processing Brix domain protein 0.02 Orthogroups_2024-Update
Seita.6G058500.1 No alias SSU processome assembly factor *(IMP4) 0.07 Orthogroups_2024-Update
Sobic.010G247400.1 No alias SSU processome assembly factor *(IMP4) 0.04 Orthogroups_2024-Update
Solyc01g007250 No alias U3 small nucleolar ribonucleoprotein protein imp4,... 0.07 Orthogroups_2024-Update
Solyc11g065980 No alias U3 small nucleolar ribonucleoprotein protein imp4,... 0.02 Orthogroups_2024-Update
Sopen01g003240 No alias Brix domain 0.02 Orthogroups_2024-Update
evm.model.contig_2299.1 No alias (at1g63780 : 325.0) Small nucleolar ribonucleoprotein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007109 Brix 90 240
No external refs found!