evm.model.tig00020848.66

Description : (at2g44980 : 201.0) SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 17488 Blast hits to 15031 proteins in 1958 species: Archae - 101; Bacteria - 5047; Metazoa - 3666; Fungi - 3968; Plants - 1607; Viruses - 135; Other Eukaryotes - 2964 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 190.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 402.0) & (original description: no original description)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00020848.66
Cluster	HCCA clusters: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
155996	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Orthogroups_2024-Update
Bradi2g36380	No alias	Homeotic gene regulator	0.01	Orthogroups_2024-Update
HORVU3Hr1G012850.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.05	Orthogroups_2024-Update
Pp1s317_10V6	No alias	chromodomain-helicase-dna-binding protein	0.01	Orthogroups_2024-Update
Pp1s338_32V6	No alias	chromodomain helicase dna binding protein 3	0.02	Orthogroups_2024-Update
Seita.5G402900.1	No alias	Unknown function	0.01	Orthogroups_2024-Update
Seita.6G108300.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.010G065300.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.02	Orthogroups_2024-Update
Sopen01g036380	No alias	hypothetical protein	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predicted GO
BP	GO:0000098	sulfur amino acid catabolic process	IEP	Predicted GO
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predicted GO
MF	GO:0015297	antiporter activity	IEP	Predicted GO
MF	GO:0015298	solute:cation antiporter activity	IEP	Predicted GO
MF	GO:0015299	solute:proton antiporter activity	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predicted GO
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0030258	lipid modification	IEP	Predicted GO
BP	GO:0030259	lipid glycosylation	IEP	Predicted GO
BP	GO:0030328	prenylcysteine catabolic process	IEP	Predicted GO
BP	GO:0030329	prenylcysteine metabolic process	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Predicted GO
BP	GO:0044248	cellular catabolic process	IEP	Predicted GO
BP	GO:0044273	sulfur compound catabolic process	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	369	481
IPR000330	SNF2_N	22	281

External Links

No external refs found!

evm.model.tig00020848.66

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation