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  5. evm.model.tig00020903.33

evm.model.tig00020903.33


Description : (at1g79990 : 1008.0) structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74269 Blast hits to 32109 proteins in 811 species: Archae - 56; Bacteria - 8450; Metazoa - 29737; Fungi - 16170; Plants - 9747; Viruses - 0; Other Eukaryotes - 10109 (source: NCBI BLink). & (p49178|gbb_maize : 87.8) Guanine nucleotide-binding protein subunit beta - Zea mays (Maize) & (reliability: 2016.0) & (original description: no original description)


Gene families : OG_42_0001146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020903.33
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
A4A49_56618 No alias coatomer subunit beta'-2 0.01 Orthogroups_2024-Update
At1g79990 No alias Coatomer subunit beta' [Source:UniProtKB/TrEMBL;Acc:A0A178WGE9] 0.03 Orthogroups_2024-Update
At3g15980 No alias Coatomer subunit beta' [Source:UniProtKB/TrEMBL;Acc:F4J1E5] 0.01 Orthogroups_2024-Update
Bradi1g51210 No alias Coatomer, beta\' subunit 0.03 Orthogroups_2024-Update
Bradi3g07926 No alias Coatomer, beta\' subunit 0.02 Orthogroups_2024-Update
Cre02.g118500 No alias Coatomer, beta\' subunit 0.02 Orthogroups_2024-Update
Glyma.07G034700 No alias Coatomer, beta\' subunit 0.01 Orthogroups_2024-Update
Glyma.08G207300 No alias Coatomer, beta\' subunit 0.01 Orthogroups_2024-Update
HORVU7Hr1G019930.1 No alias subunit beta2 of coat protein complex 0.02 Orthogroups_2024-Update
PSME_00015327-RA No alias (at1g52360 : 276.0) Coatomer, beta' subunit; FUNCTIONS... 0.01 Orthogroups_2024-Update
Pp1s243_63V6 No alias coatomer beta 0.03 Orthogroups_2024-Update
Pp1s61_1V6 No alias coatomer beta 0.03 Orthogroups_2024-Update
Pp1s79_180V6 No alias coatomer beta 0.04 Orthogroups_2024-Update
Seita.1G040200.1 No alias subunit beta2 of coat protein complex 0.03 Orthogroups_2024-Update
Seita.4G227600.1 No alias subunit beta2 of coat protein complex 0.04 Orthogroups_2024-Update
Sobic.004G088450.1 No alias subunit beta2 of coat protein complex 0.02 Orthogroups_2024-Update
Sobic.010G178600.1 No alias subunit beta2 of coat protein complex 0.02 Orthogroups_2024-Update
Solyc03g120270 No alias Coatomer beta subunit, putative (AHRD V3.3 *** B9SQC0_RICCO) 0.01 Orthogroups_2024-Update
Solyc06g066730 No alias Coatomer beta subunit, putative (AHRD V3.3 *** B9SQC0_RICCO) 0.03 Orthogroups_2024-Update
Solyc12g043000 No alias Coatomer subunit beta-like protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen03g039150 No alias Coatomer WD associated region 0.01 Orthogroups_2024-Update
evm.model.contig_4516.1 No alias (at1g79990 : 963.0) structural molecules; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030117 membrane coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042157 lipoprotein metabolic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 301 416
IPR006692 Coatomer_WD-assoc_reg 418 712
IPR001680 WD40_repeat 90 127
IPR001680 WD40_repeat 177 215
IPR001680 WD40_repeat 133 171
IPR001680 WD40_repeat 59 85
IPR001680 WD40_repeat 15 43
No external refs found!