1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. evm.model.tig00020911.67

evm.model.tig00020911.67


Description : (at2g27600 : 97.1) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (reliability: 194.2) & (original description: no original description)


Gene families : OG_42_0061034 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00020911.67
Cluster HCCA clusters: Cluster_114


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
CC GO:0000940 condensed chromosome outer kinetochore IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005815 microtubule organizing center IEP Predicted GO
CC GO:0005874 microtubule IEP Predicted GO
CC GO:0005876 spindle microtubule IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0034453 microtubule anchoring IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
CC GO:0099080 supramolecular complex IEP Predicted GO
CC GO:0099081 supramolecular polymer IEP Predicted GO
CC GO:0099512 supramolecular fiber IEP Predicted GO
CC GO:0099513 polymeric cytoskeletal fiber IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR015415 Vps4_C 653 693
IPR003959 ATPase_AAA_core 461 582
No external refs found!