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  5. Solyc05g024080

Solyc05g024080


Description : LOW QUALITY:Lysine-specific histone demethylase 1-like protein (AHRD V3.3 *-* A0A0B0PVB3_GOSAR)


Gene families : OG_42_0001212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g024080
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
A4A49_34200 No alias protein flowering locus d 0.03 Orthogroups_2024-Update
Brara.A03242.1 No alias histone demethylase *(KDM1a/b/c) 0.05 Orthogroups_2024-Update
LOC_Os02g51880 No alias amine oxidase, putative, expressed 0.03 Orthogroups_2024-Update
Potri.002G013100 No alias LSD1-like 1 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!