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  5. Solyc05g025510

Solyc05g025510


Description : transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT5G08560.3)


Gene families : OG_42_0002034 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g025510
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
At5g43920 No alias WD repeat-containing protein WDS homolog... 0.03 Orthogroups_2024-Update
Seita.6G076200.1 No alias component *(GID7) of GID ubiquitination complex 0.03 Orthogroups_2024-Update
Sopen05g019720 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 262 298
IPR001680 WD40_repeat 519 556
IPR001680 WD40_repeat 348 386
IPR001680 WD40_repeat 474 513
IPR001680 WD40_repeat 308 344
No external refs found!