1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g025600

Solyc05g025600


Description : LOW QUALITY:Photosystem II subunit X (AHRD V3.3 *** A0A061GJE6_THECC)


Gene families : OG_42_0003584 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003584_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g025600
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_00335 No alias hypothetical protein 0.09 Orthogroups_2024-Update
A4A49_04481 No alias hypothetical protein 0.08 Orthogroups_2024-Update
At2g06520 No alias PSBX [Source:UniProtKB/TrEMBL;Acc:A0A178W0Y5] 0.03 Orthogroups_2024-Update
Brara.G00467.1 No alias component *(PsbX) of PS-II complex 0.1 Orthogroups_2024-Update
Brara.H00651.1 No alias component *(PsbX) of PS-II complex 0.04 Orthogroups_2024-Update
Brara.H00652.1 No alias component *(PsbX) of PS-II complex 0.04 Orthogroups_2024-Update
Glyma.04G055300 No alias photosystem II subunit X 0.08 Orthogroups_2024-Update
Glyma.06G055500 No alias photosystem II subunit X 0.13 Orthogroups_2024-Update
Glyma.09G067700 No alias photosystem II subunit X 0.04 Orthogroups_2024-Update
Glyma.09G073900 No alias photosystem II subunit X 0.1 Orthogroups_2024-Update
LOC_Os03g22370 No alias ultraviolet-B-repressible protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_59693g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Mp6g21460.1 No alias component PsbX of PS-II complex 0.02 Orthogroups_2024-Update
Pp1s116_110V6 No alias ultraviolet-b-repressible protein 0.13 Orthogroups_2024-Update
Pp1s249_53V6 No alias ultraviolet-b-repressible protein 0.04 Orthogroups_2024-Update
Pp1s307_12V6 No alias ultraviolet-b-repressible protein 0.06 Orthogroups_2024-Update
Seita.2G429000.1 No alias component *(PsbX) of PS-II complex 0.05 Orthogroups_2024-Update
Sobic.002G414400.1 No alias component *(PsbX) of PS-II complex 0.09 Orthogroups_2024-Update
Sobic.003G055300.1 No alias component *(PsbX) of PS-II complex 0.04 Orthogroups_2024-Update
Sopen05g020200 No alias Photosystem II reaction centre X protein (PsbX) 0.08 Orthogroups_2024-Update
Sopen12g004000 No alias Photosystem II reaction centre X protein (PsbX) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA InterProScan predictions
BP GO:0015979 photosynthesis IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005102 signaling receptor binding IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009518 PSII_PsbX 74 111
No external refs found!