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  5. Solyc01g065540

Solyc01g065540


Description : Two-component response regulator (AHRD V3.3 *** W9RS74_9ROSA)


Gene families : OG_42_0000401 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000401_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g065540
Cluster HCCA clusters: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
At3g16857 No alias Two-component response regulator ARR1... 0.03 Orthogroups_2024-Update
Brara.C04477.1 No alias subgroup ARR-B transcription factor & B-type ARR... 0.03 Orthogroups_2024-Update
Glyma.17G217100 No alias response regulator 12 0.03 Orthogroups_2024-Update
LOC_Os03g12350 No alias two-component response regulator, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00025688-RA No alias (at4g16110 : 251.0) Encodes a pollen-specific... 0.05 Orthogroups_2024-Update
Potri.018G021300 No alias response regulator 12 0.04 Orthogroups_2024-Update
Seita.9G485100.1 No alias subgroup ARR-B transcription factor & B-type ARR... 0.04 Orthogroups_2024-Update
Sobic.004G066600.1 No alias subgroup ARR-B transcription factor & B-type ARR... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
CC GO:0009317 acetyl-CoA carboxylase complex IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
InterPro domains Description Start Stop
IPR001789 Sig_transdc_resp-reg_receiver 31 139
IPR001005 SANT/Myb 213 263
No external refs found!