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  5. evm.model.tig00021179.32

evm.model.tig00021179.32


Description : (at4g02480 : 356.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (p54774|cdc48_soybn : 179.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 712.0) & (original description: no original description)


Gene families : OG_42_0000296 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00021179.32
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Kfl00036_0360 kfl00036_0360_v1.1 (at4g02480 : 695.0) AAA-type ATPase family protein;... 0.01 Orthogroups_2024-Update
LOC_Os07g47530 No alias AAA-type ATPase family protein, putative, expressed 0.01 Orthogroups_2024-Update
Mp3g10920.1 No alias Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Seita.1G320300.1 No alias Unknown function 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 288 417
No external refs found!