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  5. Solyc05g041870

Solyc05g041870


Description : LOW QUALITY:Auxin-induced in root cultures protein 12, putative (AHRD V3.3 *** B9T186_RICCO)


Gene families : OG_42_0000188 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000188_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g041870
Cluster HCCA clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
101207 No alias Auxin-responsive family protein 0.02 Orthogroups_2024-Update
At4g12980 No alias Cytochrome b561 and DOMON domain-containing protein... 0.03 Orthogroups_2024-Update
Brara.A03602.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g09850 No alias auxin-responsive protein-related, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g24790 No alias AIR12, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g32470 No alias membrane protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.019G113200 No alias Auxin-responsive family protein 0.03 Orthogroups_2024-Update
Seita.6G217100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G133600.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:0050080 malonyl-CoA decarboxylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005018 DOMON_domain 86 185
No external refs found!