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  5. evm.model.tig00021319.55

evm.model.tig00021319.55


Description : (p93107|pf20_chlre : 563.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (at5g67320 : 133.0) Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.; high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description)


Gene families : OG_42_0012017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00021319.55
Cluster HCCA clusters: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cre04.g227900 No alias WD-40 repeat family protein / small nuclear... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0003352 regulation of cilium movement IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005929 cilium IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
CC GO:0031514 motile cilium IEP Predicted GO
BP GO:0032879 regulation of localization IEP Predicted GO
BP GO:0032886 regulation of microtubule-based process IEP Predicted GO
BP GO:0040011 locomotion IEP Predicted GO
CC GO:0042995 cell projection IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0048870 cell motility IEP Predicted GO
BP GO:0051270 regulation of cellular component movement IEP Predicted GO
BP GO:0060632 regulation of microtubule-based movement IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
CC GO:0120025 plasma membrane bounded cell projection IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 453 489
IPR001680 WD40_repeat 284 320
IPR001680 WD40_repeat 327 363
IPR001680 WD40_repeat 369 405
IPR001680 WD40_repeat 537 573
IPR001680 WD40_repeat 410 447
No external refs found!