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Description : (at5g64760 : 270.0) Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.; regulatory particle non-ATPase subunit 5B (RPN5B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN5) (TAIR:AT5G09900.2); Has 838 Blast hits to 828 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 291; Plants - 115; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink). & (reliability: 540.0) & (original description: no original description)
Gene families : OG_42_0003261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003261_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Cyanophora release: evm.model.tig00021348.57 | |
| Cluster | HCCA clusters: Cluster_22 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At5g09900 | No alias | 26S proteasome regulatory subunit, putative (RPN5)... | 0.01 | Orthogroups_2024-Update | |
| Bradi1g01560 | No alias | 26S proteasome regulatory subunit, putative (RPN5) | 0.05 | Orthogroups_2024-Update | |
| Bradi1g17990 | No alias | 26S proteasome regulatory subunit, putative (RPN5) | 0.05 | Orthogroups_2024-Update | |
| Brara.B00334.1 | No alias | regulatory component *(RPN5) of 26S proteasome | 0.01 | Orthogroups_2024-Update | |
| Brara.J02354.1 | No alias | regulatory component *(RPN5) of 26S proteasome | 0.01 | Orthogroups_2024-Update | |
| Cre14.g632775 | No alias | 26S proteasome regulatory subunit, putative (RPN5) | 0.11 | Orthogroups_2024-Update | |
| HORVU5Hr1G122430.1 | No alias | regulatory component *(RPN5) of 26S proteasome | 0.01 | Orthogroups_2024-Update | |
| Kfl00050_0370 | kfl00050_0370_v1.1 | (at5g64760 : 583.0) Encodes one of two isoforms for the... | 0.06 | Orthogroups_2024-Update | |
| MA_10427293g0010 | No alias | (at5g09900 : 259.0) Encodes one of two isoforms for the... | 0.03 | Orthogroups_2024-Update | |
| Mp6g06620.1 | No alias | regulatory component RPN5 of 26S proteasome | 0.07 | Orthogroups_2024-Update | |
| PSME_00006195-RA | No alias | (at5g09900 : 671.0) Encodes one of two isoforms for the... | 0.02 | Orthogroups_2024-Update | |
| Seita.9G009000.1 | No alias | regulatory component *(RPN5) of 26S proteasome | 0.05 | Orthogroups_2024-Update | |
| Sobic.001G010700.1 | No alias | regulatory component *(RPN5) of 26S proteasome | 0.09 | Orthogroups_2024-Update | |
| Solyc04g051370 | No alias | 26S proteasome non-ATPase regulatory subunit (AHRD V3.3... | 0.01 | Orthogroups_2024-Update | |
| Sopen04g022780 | No alias | PCI domain | 0.01 | Orthogroups_2024-Update | |
| evm.model.contig_3534.7 | No alias | (at5g09900 : 280.0) Encodes one of two isoforms for the... | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint | IEP | Predicted GO |
| BP | GO:0000077 | DNA damage checkpoint | IEP | Predicted GO |
| BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| CC | GO:0000502 | proteasome complex | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
| MF | GO:0003879 | ATP phosphoribosyltransferase activity | IEP | Predicted GO |
| MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004618 | phosphoglycerate kinase activity | IEP | Predicted GO |
| MF | GO:0004784 | superoxide dismutase activity | IEP | Predicted GO |
| MF | GO:0004807 | triose-phosphate isomerase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005524 | ATP binding | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005783 | endoplasmic reticulum | IEP | Predicted GO |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
| CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
| BP | GO:0006508 | proteolysis | IEP | Predicted GO |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Predicted GO |
| BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
| BP | GO:0006801 | superoxide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
| MF | GO:0008144 | drug binding | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008233 | peptidase activity | IEP | Predicted GO |
| BP | GO:0009056 | catabolic process | IEP | Predicted GO |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Predicted GO |
| BP | GO:0009894 | regulation of catabolic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0015631 | tubulin binding | IEP | Predicted GO |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Predicted GO |
| MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Predicted GO |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | Predicted GO |
| MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| BP | GO:0019725 | cellular homeostasis | IEP | Predicted GO |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| CC | GO:0030896 | checkpoint clamp complex | IEP | Predicted GO |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Predicted GO |
| BP | GO:0031570 | DNA integrity checkpoint | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| CC | GO:0035145 | exon-exon junction complex | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| BP | GO:0042176 | regulation of protein catabolic process | IEP | Predicted GO |
| BP | GO:0042592 | homeostatic process | IEP | Predicted GO |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044248 | cellular catabolic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0045454 | cell redox homeostasis | IEP | Predicted GO |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Predicted GO |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Predicted GO |
| BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0065008 | regulation of biological quality | IEP | Predicted GO |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
| CC | GO:1905368 | peptidase complex | IEP | Predicted GO |
| CC | GO:1905369 | endopeptidase complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |