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  5. evm.model.tig00021464.16

evm.model.tig00021464.16


Description : (at1g53750 : 664.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (q9fxt9|prs7_orysa : 664.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Oryza sativa (Rice) & (reliability: 1328.0) & (original description: no original description)


Gene families : OG_42_0002955 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002955_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00021464.16
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
At1g53750 No alias RPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8] 0.01 Orthogroups_2024-Update
Bradi1g46760 No alias regulatory particle triple-A 1A 0.04 Orthogroups_2024-Update
Cre14.g625400 No alias regulatory particle triple-A 1A 0.12 Orthogroups_2024-Update
Glyma.03G262800 No alias regulatory particle triple-A 1A 0.01 Orthogroups_2024-Update
Glyma.16G015500 No alias regulatory particle triple-A 1A 0.01 Orthogroups_2024-Update
Glyma.19G261800 No alias regulatory particle triple-A 1A 0.01 Orthogroups_2024-Update
HORVU6Hr1G083150.1 No alias regulatory component *(RPT1) of 26S proteasome 0.03 Orthogroups_2024-Update
HORVU7Hr1G032070.1 No alias regulatory component *(RPT1) of 26S proteasome 0.01 Orthogroups_2024-Update
Kfl00043_0180 kfl00043_0180_v1.1 (o64982|prs7_prupe : 745.0) 26S protease regulatory... 0.04 Orthogroups_2024-Update
MA_10435556g0010 No alias (q41365|prs7_spiol : 733.0) 26S protease regulatory... 0.02 Orthogroups_2024-Update
Mp2g04840.1 No alias regulatory component RPT1 of 26S proteasome 0.03 Orthogroups_2024-Update
Pp1s49_256V6 No alias 26S protease regulatory subunit 7 (26S proteasome... 0.03 Orthogroups_2024-Update
Seita.1G343700.1 No alias regulatory component *(RPT1) of 26S proteasome 0.07 Orthogroups_2024-Update
Seita.4G042600.1 No alias regulatory component *(RPT1) of 26S proteasome 0.08 Orthogroups_2024-Update
Sobic.003G248600.1 No alias regulatory component *(RPT1) of 26S proteasome 0.02 Orthogroups_2024-Update
Sobic.004G321900.1 No alias regulatory component *(RPT1) of 26S proteasome 0.06 Orthogroups_2024-Update
Solyc06g063140 No alias 26S protease regulatory subunit, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen03g041500 No alias ATPase family associated with various cellular activities (AAA) 0.02 Orthogroups_2024-Update
Sopen06g022590 No alias ATPase family associated with various cellular activities (AAA) 0.01 Orthogroups_2024-Update
evm.model.contig_3817.1 No alias (q9fxt9|prs7_orysa : 692.0) 26S protease regulatory... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019905 syntaxin binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 208 338
No external refs found!