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  5. Solyc05g049910

Solyc05g049910


Description : F-box family protein (AHRD V3.3 --* AT5G50220.1)


Gene families : OG_42_0007447 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007447_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g049910
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
A4A49_33609 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Potri.007G027200 No alias F-box family protein 0.04 Orthogroups_2024-Update
Solyc01g097620 No alias LOW QUALITY:F-box protein (AHRD V3.3 --* W9SND6_9ROSA) 0.03 Orthogroups_2024-Update
Solyc02g062800 No alias F-box protein (AHRD V3.3 *** W9SND6_9ROSA) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044030 regulation of DNA methylation IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!