- Home
- Species
- Cyanophora paradoxa
- Sequence
- evm.model.tig00021589.28
evm.model.tig00021589.28
Description : (at3g26560 : 335.0) ATP-dependent RNA helicase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Domain of unknown function DUF1605 (InterPro:IPR011709), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.2); Has 53052 Blast hits to 35825 proteins in 3176 species: Archae - 195; Bacteria - 13845; Metazoa - 17201; Fungi - 5520; Plants - 3365; Viruses - 1203; Other Eukaryotes - 11723 (source: NCBI BLink). & (reliability: 670.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Cyanophora release: evm.model.tig00021589.28 | |
| Cluster | HCCA clusters: Cluster_27 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| A4A49_00869 | No alias | putative pre-mrna-splicing factor atp-dependent rna... | 0.02 | Orthogroups_2024-Update | |
| At1g26370 | No alias | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | Orthogroups_2024-Update | |
| Bradi4g16730 | No alias | RNA helicase family protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G068479 | No alias | RNA helicase family protein | 0.01 | Orthogroups_2024-Update | |
| Glyma.05G146100 | No alias | RNA helicase family protein | 0.02 | Orthogroups_2024-Update | |
| HORVU0Hr1G007860.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
| PSME_00004225-RA | No alias | (at3g62310 : 1190.0) RNA helicase family protein;... | 0.01 | Orthogroups_2024-Update | |
| Pp1s427_10V6 | No alias | atp-dependent rna | 0.01 | Orthogroups_2024-Update | |
| Seita.9G426000.1 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex | 0.01 | Orthogroups_2024-Update | |
| Sobic.009G125100.1 | No alias | RNA helicase *(Prp2) | 0.01 | Orthogroups_2024-Update | |
| Sobic.009G254100.1 | No alias | RNA helicase *(Prp22) | 0.02 | Orthogroups_2024-Update | |
| Solyc01g110990 | No alias | RNA helicase DEAH-box6 | 0.02 | Orthogroups_2024-Update | |
| Solyc07g039550 | No alias | RNA helicase DEAH-box21 | 0.02 | Orthogroups_2024-Update | |
| Sopen01g039450 | No alias | Helicase associated domain (HA2) | 0.02 | Orthogroups_2024-Update | |
| Sopen09g002920 | No alias | Helicase associated domain (HA2) | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004386 | helicase activity | IEA | InterProScan predictions |
| MF | GO:0016462 | pyrophosphatase activity | None | Extended |
| MF | GO:0016787 | hydrolase activity | None | Extended |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | None | Extended |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | None | Extended |
| MF | GO:0017111 | nucleoside-triphosphatase activity | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| CC | GO:0005956 | protein kinase CK2 complex | IEP | Predicted GO |
| BP | GO:0006066 | alcohol metabolic process | IEP | Predicted GO |
| BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
| MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
| MF | GO:0016740 | transferase activity | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
| MF | GO:0019207 | kinase regulator activity | IEP | Predicted GO |
| BP | GO:0019751 | polyol metabolic process | IEP | Predicted GO |
| MF | GO:0019887 | protein kinase regulator activity | IEP | Predicted GO |
| BP | GO:0032958 | inositol phosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0036211 | protein modification process | IEP | Predicted GO |
| BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
| BP | GO:0043647 | inositol phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0046165 | alcohol biosynthetic process | IEP | Predicted GO |
| BP | GO:0046173 | polyol biosynthetic process | IEP | Predicted GO |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Predicted GO |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR007502 | Helicase-assoc_dom | 1 | 54 |
| IPR011709 | DUF1605 | 135 | 171 |
