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  5. Solyc05g050350

Solyc05g050350


Description : Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g050350
Cluster HCCA clusters: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
113786 No alias cyclic nucleotide-gated channel 6 0.02 Orthogroups_2024-Update
84488 No alias cyclic nucleotide-gated cation channel 4 0.02 Orthogroups_2024-Update
At1g15990 No alias Putative cyclic nucleotide-gated ion channel 7... 0.02 Orthogroups_2024-Update
At2g24610 No alias cyclic nucleotide-gated channel 14 [Source:TAIR;Acc:AT2G24610] 0.03 Orthogroups_2024-Update
At5g57940 No alias Probable cyclic nucleotide-gated ion channel 5... 0.02 Orthogroups_2024-Update
Bradi2g57697 No alias cyclic nucleotide-gated channel 18 0.02 Orthogroups_2024-Update
GRMZM2G074317 No alias Cyclic nucleotide-regulated ion channel family protein 0.02 Orthogroups_2024-Update
Glyma.16G025400 No alias cyclic nucleotide-gated channel 13 0.03 Orthogroups_2024-Update
MA_167620g0010 No alias (at5g15410 : 804.0) 'defense, no death' gene (DND1)... 0.03 Orthogroups_2024-Update
Potri.014G097900 No alias cyclic nucleotide gated channel 1 0.03 Orthogroups_2024-Update
Potri.015G033900 No alias cyclic nucleotide-binding transporter 1 0.04 Orthogroups_2024-Update
Potri.017G089800 No alias Cyclic nucleotide-regulated ion channel family protein 0.04 Orthogroups_2024-Update
Sobic.001G155100.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Solyc09g007840 No alias Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 511 601
IPR005821 Ion_trans_dom 96 412
No external refs found!