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  5. evm.model.tig00022075.53

evm.model.tig00022075.53


Description : (at3g09630 : 404.0) Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT5G02870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 808.0) & (original description: no original description)


Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00022075.53
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
166994 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
At3g09630 No alias 60S ribosomal protein L4-1... 0.02 Orthogroups_2024-Update
Bradi1g05510 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
Bradi1g55510 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
Brara.A03522.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.E03076.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.J02849.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Cre09.g397697 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
GRMZM2G100403 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
Glyma.10G048600 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
HORVU4Hr1G075710.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.01 Orthogroups_2024-Update
Kfl00456_0100 kfl00456_0100_v1.1 (at3g09630 : 489.0) Ribosomal protein L4/L1 family;... 0.01 Orthogroups_2024-Update
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00003145-RA No alias (at3g09630 : 579.0) Ribosomal protein L4/L1 family;... 0.02 Orthogroups_2024-Update
Pp1s10_102V6 No alias 60s ribosomal protein l4 0.02 Orthogroups_2024-Update
Pp1s18_113V6 No alias 60s ribosomal protein l4 0.01 Orthogroups_2024-Update
Pp1s40_305V6 No alias 60s ribosomal protein l4 0.03 Orthogroups_2024-Update
Seita.2G055300.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.9G056000.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.01 Orthogroups_2024-Update
Sobic.001G057300.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.002G054000.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc09g007250 No alias 60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR) 0.04 Orthogroups_2024-Update
Solyc10g086010 No alias 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) 0.03 Orthogroups_2024-Update
Sopen09g002120 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
Sopen10g033800 No alias Ribosomal protein L4/L1 family 0.03 Orthogroups_2024-Update
Sopen10g035380 No alias Ribosomal protein L4/L1 family 0.04 Orthogroups_2024-Update
evm.model.contig_2049.5 No alias (at3g09630 : 394.0) Ribosomal protein L4/L1 family;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Predicted GO
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0009187 cyclic nucleotide metabolic process IEP Predicted GO
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Predicted GO
MF GO:0015109 chromate transmembrane transporter activity IEP Predicted GO
BP GO:0015703 chromate transport IEP Predicted GO
BP GO:0016032 viral process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predicted GO
CC GO:0019031 viral envelope IEP Predicted GO
BP GO:0019058 viral life cycle IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Predicted GO
CC GO:0036338 viral membrane IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0044403 symbiont process IEP Predicted GO
BP GO:0044419 interspecies interaction between organisms IEP Predicted GO
CC GO:0044423 virion part IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 23 260
IPR025755 Ribos_L4_C_dom 275 348
No external refs found!